Detail information of GWHGAAEX008104/evm.TU.scaffold_21.130


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13760Alpha tubulin
nrgi|743791194|ref|XP_010923361.1|0PREDICTED: tubulin alpha-3 chain [Elaeis guineensis]
Swissprottr|O22349|TBA3_ELEIN0Tubulin alpha-3 chain
trEMBLtr|U5D474|U5D474_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERN20411.1}
TAIRAT5G197800tubulin alpha-5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002235765953580872-
Transcript Sequence

Network for GWHGAAEX008104

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.24Tubulin32131.80E-67
PF03953.16Tubulin_C2633911.50E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07374TUBA Phagosome map04145
Apoptosismap04210
Tight junctionmap04530
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017Biological Processmicrotubule-based process
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
GO:0005200Molecular Functionstructural constituent of cytoskeleton
GO:0005874Cellular Componentmicrotubule

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms432.060
SRR2545915Juvenile tuber389.500
SRP108465SRR5643513five period of Gastrodia elata449.200
SRR5643514five period of Gastrodia elata371.040
SRR5643515five period of Gastrodia elata471.320
SRR5643524five period of Gastrodia elata388.560
SRR5643525five period of Gastrodia elata290.800
SRR5643528five period of Gastrodia elata398.000
SRR5643658five period of Gastrodia elata218.970
SRR5643659five period of Gastrodia elata433.860
SRR5643660five period of Gastrodia elata513.850
SRR5643661five period of Gastrodia elata541.560
SRR5643662five period of Gastrodia elata634.350
SRR5643663five period of Gastrodia elata478.830
SRR5643664five period of Gastrodia elata709.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1604.110
SRR6049655Rhizomagastrodiae_C368-T10_good_1310.580
SRR6049656Rhizomagastrodiae_C368-T07_good_1576.600
SRR6049657Rhizomagastrodiae_C368-T07_good_1524.330
SRR6049658Rhizomagastrodiae_C368-T04_good_1581.040
SRR6049659Rhizomagastrodiae_C368-T04_good_1573.020
SRR6049660Rhizomagastrodiae_C368-T01_good_1509.660
SRR6049661Rhizomagastrodiae_C368-T04_good_1582.090
SRR6049662Rhizomagastrodiae_C368-T01_good_1621.390
SRR6049663Rhizomagastrodiae_C368-T01_good_1557.170
SRR6049664Rhizomagastrodiae_C368-T10_good_1716.210
SRR6049665Rhizomagastrodiae_C368-T10_good_1716.210
SRP279888GastroGastrodia elata tuber 973.77
JuvenJuvenile tuber585.87
Mother_GastroMother tuber of Gastrodia elata 698.28
Mother_JuvenMother tuber of Juvenile 640.36