Gene detail

Detail information of GWHGAAEX008106/evm.TU.scaffold_21.133_evm.TU.scaffold_21.134

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2640	8.00E-55	Thioredoxin
nr	gi\|672189020\|ref\|XP_008813732.1\|	1.84E-79	PREDICTED: 5'-adenylylsulfate reductase-like 5 [Phoenix dactylifera]
Swissprot	tr\|Q93YX4\|APRL5_ARATH	3.00E-60	5'-adenylylsulfate reductase-like 5 (Precursor)
trEMBL	tr\|G0Z814\|G0Z814_9ROSA	1.00E-69	Disulfide isomerase-related protein {ECO:0000313\|EMBL:AEK94318.1}
TAIR	AT3G03860	8.00E-55	APR-like 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	3612081	3644612	+

Transcript Sequence
>GWHTAAEX008106 GCTGCCACCCACTCATGCAGCTGGAAAAAGTAGGCAATAATAAAATCATTCCCAAAGAATTTTTCGTTCAATCTCATTTCATCTCCTGTCTCTTCCCTCCCCAGCTTCCACTCCGTGCTCTCAACGTCCATGTCGGCTTCTAGTTTGCGCCTATTTTTCTTCATCTTGTTTGCGTGCTCGTCGTCGCTGACGTCTTGTGGATCTGTCGTTGCTCTGCCTCTGTGCCCTCGATCCGACCTTGCTGGAGTTGCGGATGCCCTTAGATCAGAATGCCCTATTTGGATCGAGCGTTCTTTGCCGGAAGAGGTTCATGGGGACACCCTTGATAAAAGGCTGGCTGGAGTAGAAGATGGCCAATATATCTCTGTGCTCTTCCATGCATCTTGGTGCCCATTCTCTCGGAACATTAAACCCACCTTTGATGCACTCAGCTCTATGTTTCCACAATTTTGCCATTTAACAGTTGAAGAATCTTCTACCATTCCAAGGTACAACAAAGATGACCGTGTGTTTTCAAGATATGGAATCCATAGTTTCCCATCCATTTTGTTGGCCAACCGAACCATAAGGATCAGATACCATGGCTCAAAAGACCTTGTTTCTCTAGCGCACTTCTACACCAAAGCTACCGGCCAAGATCCAGTTGCATATTTTCATGTGGATCAAACGAAGGAGGCGACAGAGGCTTCCTTGAGGGATGAACCGTACCTGGCATTATCTTTGCTGTTTGTTATCTGGAGGGCATTCACTTGCTTCTTCCCTGAGCTCTTCTCAAAACTTGAGTTTTTCTGGGCAGTGTATGGTTTGCGCCGTGTGAACTTTGGCGCCCTAAGCGAGCTGAAGAGGGTGTGGAACAAGCTACGAAATAAGACGGGAAATCTGCACAAAGGGGCTGAGAGCGCCCGCGTGTGGGCGTCATCTTTTGCTTCTGTCTCGCTGGGCAAACCGTCTTCTTCCAGGTTGGCTCGCTCTGACTAAAAGTGCTGCTATGCTATTCAATAATCTTCCCCTAATTGTTCCAAAAGTGGAGGATGGATGCATGCGCAATTTGGGGATTTGTCTATGCTTTCTTGCTTGTGTACCCCATTGTGAAAAATACCCTCTCTCTCTTACTTTTGGAAGGCTTGGAAGCATTTATTGAGGGTAGGATAGCTTTTGTTACTGTAGCATTTGCCAAAAGGAGCCTAATGGTTATTTGGGGTATTTATTTTGGGAGGTTATTGGATAGTATAGCAGCACTTATGACCCCACGAGGTTGTTCATTGCTGACAAAGGTAGGGTTGTTATAGTGCAATTAGGTTAGCATCAATCTATCGTTTTTTCTGTGAATGCTTATGGTTTGGAACTTTATGCGCAAAGCACGGTGTACCAAAGTGGTCTTCTTAGCGTGTAAATTCAGTGGATTTCGCAATCCTTCTGTTTTTGTATATTAATATGCTCGCACGCACTCAAGTGTGGTGCACGATTACTGTATTGTTGCCACATCCATGTTCGAATTTTGAGTGAGTAAAAGTCATTAGGGTTTGGCAAGAACGCCTTTTAAGACTTAGATTTCATCATGTTCCTCAAGGGTATTATAGTTTGTGCAATGATTAAGCTATGATATGATGGTGGCTGTCTTCTATTTGTGGACCAGATAGCTGCTTATAACTTATTAATTTTTAATGGAGTGGTTCTTTAATTCTGTGATTACTATGCTTATTGGGGTGGAAATAATGCTGTAAATTTTTGTTTTTTCAACTGGAATGTTACTCGTGTGCTAGTGTTAATTTTGATGTCTGCTATCATTAAATGTTTGCGATGCTGGTTACTATGCATAATGTTTTGTTATTTGTATTCTTTAATAAACGTAAGCCTTATAAAGAGATAGT

Network for GWHGAAEX008106

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.19	Thioredoxin	75	162	2.50E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0045454	Biological Process	cell redox homeostasis

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.570
SRP064423	SRR2545915	Juvenile tuber	29.970
SRP108465	SRR5643513	five period of Gastrodia elata	38.520
	SRR5643514	five period of Gastrodia elata	35.720
	SRR5643515	five period of Gastrodia elata	39.010
	SRR5643524	five period of Gastrodia elata	38.050
	SRR5643525	five period of Gastrodia elata	47.120
	SRR5643528	five period of Gastrodia elata	39.280
	SRR5643658	five period of Gastrodia elata	40.790
	SRR5643659	five period of Gastrodia elata	40.710
	SRR5643660	five period of Gastrodia elata	39.030
	SRR5643661	five period of Gastrodia elata	40.930
	SRR5643662	five period of Gastrodia elata	40.020
	SRR5643663	five period of Gastrodia elata	39.150
	SRR5643664	five period of Gastrodia elata	31.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.000
SRP279888	Gastro	Gastrodia elata tuber	44.79
	Juven	Juvenile tuber	31.44
	Mother_Gastro	Mother tuber of Gastrodia elata	51.60
	Mother_Juven	Mother tuber of Juvenile	38.94