Detail information of GWHGAAEX008114/evm.TU.scaffold_21.144
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743830998|ref|XP_010934565.1| | 0 | PREDICTED: probable linoleate 9S-lipoxygenase 5 [Elaeis guineensis] |
| Swissprot | tr|Q43191|LOX15_SOLTU | 0 | Probable linoleate 9S-lipoxygenase 5 |
| trEMBL | tr|M0UAM8|M0UAM8_MUSAM | 0 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} |
| TAIR | AT1G55020 | 0 | lipoxygenase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 3938091 | 3942774 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008114
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01477.22 | PLAT | 55 | 158 | 9.80E-14 |
| PF00305.18 | Lipoxygenase | 172 | 855 | 2.20E-290 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15718 | LOX1_5 | Linoleic acid metabolism | map00591 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0016702 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.660 |
| SRR2545915 | Juvenile tuber | 6.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.760 |
| SRR5643514 | five period of Gastrodia elata | 32.300 | |
| SRR5643515 | five period of Gastrodia elata | 36.210 | |
| SRR5643524 | five period of Gastrodia elata | 43.320 | |
| SRR5643525 | five period of Gastrodia elata | 36.750 | |
| SRR5643528 | five period of Gastrodia elata | 30.090 | |
| SRR5643658 | five period of Gastrodia elata | 20.080 | |
| SRR5643659 | five period of Gastrodia elata | 22.050 | |
| SRR5643660 | five period of Gastrodia elata | 24.610 | |
| SRR5643661 | five period of Gastrodia elata | 35.790 | |
| SRR5643662 | five period of Gastrodia elata | 30.740 | |
| SRR5643663 | five period of Gastrodia elata | 26.180 | |
| SRR5643664 | five period of Gastrodia elata | 32.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 64.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 63.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 44.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 86.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 86.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.06 |
| Juven | Juvenile tuber | 7.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 239.42 | |
| Mother_Juven | Mother tuber of Juvenile | 122.36 |