Detail information of GWHGAAEX008115/evm.TU.scaffold_21.145


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28501.00E-78Predicted peptidoglycan-binding protein, contains LysM domain
nrgi|672163699|ref|XP_008801704.1|3.11E-119PREDICTED: F-box protein At1g55000 [Phoenix dactylifera]
Swissprottr|Q9FZ32|FB60_ARATH3.00E-79F-box protein At1g55000
trEMBLtr|M0TL42|M0TL42_MUSAM1.00E-116Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P27060_001}
TAIRAT1G550001.00E-78peptidoglycan-binding LysM domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002239516173965883-
Transcript Sequence

Network for GWHGAAEX008115

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.6F-box-like50801.20E-06
PF01476.19LysM1231620.00033
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.360
SRR2545915Juvenile tuber11.850
SRP108465SRR5643513five period of Gastrodia elata10.910
SRR5643514five period of Gastrodia elata11.240
SRR5643515five period of Gastrodia elata11.690
SRR5643524five period of Gastrodia elata11.890
SRR5643525five period of Gastrodia elata13.100
SRR5643528five period of Gastrodia elata15.340
SRR5643658five period of Gastrodia elata19.140
SRR5643659five period of Gastrodia elata13.070
SRR5643660five period of Gastrodia elata12.860
SRR5643661five period of Gastrodia elata16.110
SRR5643662five period of Gastrodia elata18.080
SRR5643663five period of Gastrodia elata15.570
SRR5643664five period of Gastrodia elata12.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.870
SRR6049655Rhizomagastrodiae_C368-T10_good_110.930
SRR6049656Rhizomagastrodiae_C368-T07_good_114.220
SRR6049657Rhizomagastrodiae_C368-T07_good_116.390
SRR6049658Rhizomagastrodiae_C368-T04_good_119.450
SRR6049659Rhizomagastrodiae_C368-T04_good_121.830
SRR6049660Rhizomagastrodiae_C368-T01_good_117.610
SRR6049661Rhizomagastrodiae_C368-T04_good_120.090
SRR6049662Rhizomagastrodiae_C368-T01_good_112.480
SRR6049663Rhizomagastrodiae_C368-T01_good_113.080
SRR6049664Rhizomagastrodiae_C368-T10_good_112.190
SRR6049665Rhizomagastrodiae_C368-T10_good_112.190
SRP279888GastroGastrodia elata tuber 17.49
JuvenJuvenile tuber15.02
Mother_GastroMother tuber of Gastrodia elata 18.93
Mother_JuvenMother tuber of Juvenile 17.70