Detail information of GWHGAAEX008119/evm.TU.scaffold_21.149
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1246 | 4.00E-75 | DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain |
| nr | gi|743822423|ref|XP_010932273.1| | 0 | PREDICTED: lysine-specific demethylase JMJ705-like [Elaeis guineensis] |
| Swissprot | tr|Q9STM3|REF6_ARATH | 0 | Lysine-specific demethylase REF6 |
| trEMBL | tr|D7LRW5|D7LRW5_ARALL | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EFH52161.1} |
| trEMBL | tr|D7LRW5|D7LRW5_ARALL | 9.00E-53 | Putative uncharacterized protein {ECO:0000313|EMBL:EFH52161.1} |
| TAIR | AT5G46910 | 4.00E-75 | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 4068298 | 4097593 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008119
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02375.16 | JmjN | 21 | 54 | 6.00E-14 |
| PF02373.21 | JmjC | 220 | 338 | 1.50E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.200 |
| SRR2545915 | Juvenile tuber | 4.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.480 |
| SRR5643514 | five period of Gastrodia elata | 5.560 | |
| SRR5643515 | five period of Gastrodia elata | 5.250 | |
| SRR5643524 | five period of Gastrodia elata | 5.890 | |
| SRR5643525 | five period of Gastrodia elata | 3.400 | |
| SRR5643528 | five period of Gastrodia elata | 4.970 | |
| SRR5643658 | five period of Gastrodia elata | 5.050 | |
| SRR5643659 | five period of Gastrodia elata | 3.250 | |
| SRR5643660 | five period of Gastrodia elata | 3.050 | |
| SRR5643661 | five period of Gastrodia elata | 3.370 | |
| SRR5643662 | five period of Gastrodia elata | 2.680 | |
| SRR5643663 | five period of Gastrodia elata | 3.390 | |
| SRR5643664 | five period of Gastrodia elata | 3.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.28 |
| Juven | Juvenile tuber | 7.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.90 | |
| Mother_Juven | Mother tuber of Juvenile | 6.46 |