Detail information of GWHGAAEX008121/evm.TU.scaffold_21.152


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG38007.00E-39Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor
nrgi|720056586|ref|XP_010273719.1|3.62E-76PREDICTED: uncharacterized protein LOC104609178 [Nelumbo nucifera]
trEMBLtr|A0A068VDR4|A0A068VDR4_COFCA5.00E-76Coffea canephora
TAIRAT4G30820_17.00E-39Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002241783334189191+
Transcript Sequence

Network for GWHGAAEX008121

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06391.12MAT112872.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10842MNAT1 Basal transcription factors map03022
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.290
SRR2545915Juvenile tuber21.380
SRP108465SRR5643513five period of Gastrodia elata24.030
SRR5643514five period of Gastrodia elata27.370
SRR5643515five period of Gastrodia elata24.350
SRR5643524five period of Gastrodia elata29.010
SRR5643525five period of Gastrodia elata24.620
SRR5643528five period of Gastrodia elata24.310
SRR5643658five period of Gastrodia elata23.600
SRR5643659five period of Gastrodia elata27.350
SRR5643660five period of Gastrodia elata30.070
SRR5643661five period of Gastrodia elata29.280
SRR5643662five period of Gastrodia elata24.350
SRR5643663five period of Gastrodia elata26.360
SRR5643664five period of Gastrodia elata26.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.080
SRR6049655Rhizomagastrodiae_C368-T10_good_124.420
SRR6049656Rhizomagastrodiae_C368-T07_good_124.250
SRR6049657Rhizomagastrodiae_C368-T07_good_119.490
SRR6049658Rhizomagastrodiae_C368-T04_good_121.020
SRR6049659Rhizomagastrodiae_C368-T04_good_124.360
SRR6049660Rhizomagastrodiae_C368-T01_good_120.570
SRR6049661Rhizomagastrodiae_C368-T04_good_123.130
SRR6049662Rhizomagastrodiae_C368-T01_good_126.980
SRR6049663Rhizomagastrodiae_C368-T01_good_120.760
SRR6049664Rhizomagastrodiae_C368-T10_good_129.230
SRR6049665Rhizomagastrodiae_C368-T10_good_129.230
SRP279888GastroGastrodia elata tuber 39.29
JuvenJuvenile tuber45.31
Mother_GastroMother tuber of Gastrodia elata 52.64
Mother_JuvenMother tuber of Juvenile 46.42