Detail information of GWHGAAEX008123/evm.TU.scaffold_21.154


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18090Vacuolar protein sorting-associated protein
nrgi|743862667|ref|XP_010943599.1|0PREDICTED: uncharacterized protein LOC105061294 [Elaeis guineensis]
trEMBLtr|F6HE13|F6HE13_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB50271.1}
TAIRAT1G480900calcium-dependent lipid-binding family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002241928554338653-
Transcript Sequence

Network for GWHGAAEX008123

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16908.4VPS13843273.80E-63
PF16910.4VPS13_mid_rpt5217481.70E-37
PF06101.10Vps62193420991.90E-11
PF06101.10Vps62223223177.40E-10
PF00168.29C2256926814.00E-05
PF06650.11SHR-BD328735013.00E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms66.920
SRR2545915Juvenile tuber22.410
SRP108465SRR5643513five period of Gastrodia elata9.960
SRR5643514five period of Gastrodia elata13.270
SRR5643515five period of Gastrodia elata12.380
SRR5643524five period of Gastrodia elata12.960
SRR5643525five period of Gastrodia elata14.420
SRR5643528five period of Gastrodia elata11.510
SRR5643658five period of Gastrodia elata12.270
SRR5643659five period of Gastrodia elata9.740
SRR5643660five period of Gastrodia elata12.780
SRR5643661five period of Gastrodia elata9.670
SRR5643662five period of Gastrodia elata9.010
SRR5643663five period of Gastrodia elata11.000
SRR5643664five period of Gastrodia elata13.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.630
SRR6049655Rhizomagastrodiae_C368-T10_good_110.960
SRR6049656Rhizomagastrodiae_C368-T07_good_113.510
SRR6049657Rhizomagastrodiae_C368-T07_good_113.590
SRR6049658Rhizomagastrodiae_C368-T04_good_120.980
SRR6049659Rhizomagastrodiae_C368-T04_good_120.830
SRR6049660Rhizomagastrodiae_C368-T01_good_115.690
SRR6049661Rhizomagastrodiae_C368-T04_good_119.000
SRR6049662Rhizomagastrodiae_C368-T01_good_111.520
SRR6049663Rhizomagastrodiae_C368-T01_good_114.680
SRR6049664Rhizomagastrodiae_C368-T10_good_113.150
SRR6049665Rhizomagastrodiae_C368-T10_good_113.150
SRP279888GastroGastrodia elata tuber 18.25
JuvenJuvenile tuber28.26
Mother_GastroMother tuber of Gastrodia elata 23.55
Mother_JuvenMother tuber of Juvenile 35.76