Detail information of GWHGAAEX008126/evm.TU.scaffold_21.157
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428309910|ref|YP_007120887.1| | 6.00E-104 | diaminohydroxyphosphoribosylaminopyrimidine deaminase [Microcoleus sp. PCC 7113] |
| KOG | KOG1018 | 0 | Cytosine deaminase FCY1 and related enzymes |
| nr | gi|743877469|ref|XP_010907914.1| | 0 | PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Elaeis guineensis] |
| Swissprot | tr|K7WIZ6|RIBR_MAIZE | 0 | 5-amino-6-(5-phosphoribosylamino)uracil reductase (Precursor) |
| trEMBL | tr|M0T4R1|M0T4R1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06630_001} |
| TAIR | AT3G47390_1 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 4400704 | 4453274 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008126
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00383.22 | dCMP_cyt_deam_1 | 37 | 132 | 1.20E-06 |
| PF01872.16 | RibD_C | 192 | 394 | 1.20E-41 |
| PF08719.10 | DUF1768 | 430 | 585 | 9.80E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11752 | ribD | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Riboflavin metabolism | map00740 | ||
| Quorum sensing | map02024 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009231 | Biological Process | riboflavin biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0050661 | Molecular Function | NADP binding |
| GO:0008835 | Molecular Function | diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
| GO:0008703 | Molecular Function | 5-amino-6-(5-phosphoribosylamino)uracil reductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.440 |
| SRR2545915 | Juvenile tuber | 11.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.240 |
| SRR5643514 | five period of Gastrodia elata | 9.930 | |
| SRR5643515 | five period of Gastrodia elata | 8.450 | |
| SRR5643524 | five period of Gastrodia elata | 8.770 | |
| SRR5643525 | five period of Gastrodia elata | 7.020 | |
| SRR5643528 | five period of Gastrodia elata | 7.540 | |
| SRR5643658 | five period of Gastrodia elata | 6.180 | |
| SRR5643659 | five period of Gastrodia elata | 9.990 | |
| SRR5643660 | five period of Gastrodia elata | 10.320 | |
| SRR5643661 | five period of Gastrodia elata | 8.380 | |
| SRR5643662 | five period of Gastrodia elata | 13.250 | |
| SRR5643663 | five period of Gastrodia elata | 12.030 | |
| SRR5643664 | five period of Gastrodia elata | 11.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.10 |
| Juven | Juvenile tuber | 12.27 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.92 | |
| Mother_Juven | Mother tuber of Juvenile | 13.29 |