Gene detail

Detail information of GWHGAAEX008129/evm.TU.scaffold_21.163

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|397690682\|ref\|YP_006527936.1\|	3.00E-38	ribosome recycling factor [Melioribacter roseus P3M-2]
KOG	KOG4759	3.00E-89	Ribosome recycling factor
nr	gi\|743765239\|ref\|XP_010912836.1\|	1.77E-110	PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Elaeis guineensis]
Swissprot	tr\|P82231\|RRFC_SPIOL	2.00E-29	Ribosome-recycling factor, chloroplastic (Precursor)
trEMBL	tr\|I1IZ47\|I1IZ47_BRADI	1.00E-103	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI5G14160.1}
TAIR	AT3G01800	3.00E-89	Ribosome recycling factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	4600741	4624583	-

Transcript Sequence
>GWHTAAEX008129 CTTAGATGCAATTGAGAACTGATAGGCTAATCACCTCAGTGCTTCTGGAATACCCGATTGAGGTTTAACGGCCTGAATCGTATTTGTCCAATTTCAGTATTTATGCACTTGCATCCCCGCCTAGACCCTAAATCCCGATTTTTCACTGTGCTGAGCAGAGAAACCGAGGGGGGGAATAGGCAAACGTACTCATGGCGTTCTTTCTCCGGAGAGTGTTCTCGTCTAAATGCTTTGTCTCCTTTCGTTTTACCTGCCATATTGTGCATCTGAGTGATGCGCAAACCGGCGAAATGGATATCGGGGCTCCTATAGTGCGCTTTAAAGAAGTTATTATTCGTACGAAGCTTGATCCATTTTGGGCAAGTCGAAGAGGTTTCGCCAAAGGAAGGAAATTGAAGGATGAAAGTAATAGTGATACCGTTAAAGTTGCTCCTGACATTGGGCCTACTGTGAAATCAAATACGCTCTCCTTGATGGAGGCAGGAATTGCTGCTTTATCAAGAGAGTTGAGTAAAATTAGAACAGGAAGAGCAACTACAGGGATGCTTGATCATATAATTGTAGAGGCACGCGGTGTAAAGATGTCCTTAAATCGTGTTGCTGTTGTTTCTGCTGTGGACGCACACACTCTCTCAGTGACACCTTATGATCCCAATACCTTAAAAGAAATAGAAAGTGCGATAGTTTCTTCCCCCTTGGGCATAAATCCAATCCCTGGTGAACAACGGCTCATCGCCCCAATCCCACCGTTGACGAAGGAGAACATGCAAGCATTGTGTAAGGTGGTTACAAAATGTGCTGAAGATTGTCGACAAAGCATTAGAAGAGCACGACAAAAGGCTCTGGATGCAATAAAGAAATCTGCATCAAGTATTCCAAAAGATGATGTGAAGAGACTGGAGAAAGAAATTGAGGAGATGACAAAGCGTTTCATCAAGTCCGCCGATGACATGTCTAGGTCAAAGGAGAAGGAGATGACTGTGACCTGAATATGGCTGCAGGCTTCTCCCTAATTTTGCCAGTACCATTAAAAAAGGGTATTGGAATCAGTTCCACATCTTCTCTGAAGTTCCAAGTTATATGGCTTGCAATATTCGCCTTTGGGGTCAAGTTTTTTGGTCACGCACACTTATTTTTTAGTCTATGTTGTTAATTTGTTTAACAACACCCTTTGTTCGATCTACAAAAAAGCCAATTTTGTTATTTTGTCAGTTGAGCAGTAACATTCAGGCAATATTGGTCGATTCTCACTTTATTCTTAGAGGATAGGCGACGTGTGAATACTGAATGGGTATGTGGCCATTGCGCTATCAGTGAACACTAGTTATAGTCCAGCTTTCATTAAGGGGACCTTAACTATGGTTTCATCCTTTAAATTGTTGTCTTGGTATTCATTGAATGTTTAATAAGTAAACTTCTTTTTAGTTATATGTTGATGGAAACATGTTCTTTGAAATTCTATAATTTCTCAAATA

Network for GWHGAAEX008129

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01765.18	RRF	102	262	1.10E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.270
SRP064423	SRR2545915	Juvenile tuber	9.330
SRP108465	SRR5643513	five period of Gastrodia elata	12.580
	SRR5643514	five period of Gastrodia elata	12.990
	SRR5643515	five period of Gastrodia elata	10.890
	SRR5643524	five period of Gastrodia elata	12.970
	SRR5643525	five period of Gastrodia elata	9.200
	SRR5643528	five period of Gastrodia elata	10.100
	SRR5643658	five period of Gastrodia elata	7.940
	SRR5643659	five period of Gastrodia elata	14.580
	SRR5643660	five period of Gastrodia elata	16.780
	SRR5643661	five period of Gastrodia elata	16.520
	SRR5643662	five period of Gastrodia elata	14.230
	SRR5643663	five period of Gastrodia elata	15.280
	SRR5643664	five period of Gastrodia elata	13.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.060
SRP279888	Gastro	Gastrodia elata tuber	11.42
	Juven	Juvenile tuber	12.64
	Mother_Gastro	Mother tuber of Gastrodia elata	5.69
	Mother_Juven	Mother tuber of Juvenile	7.76