Detail information of GWHGAAEX008136/evm.TU.scaffold_21.172


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28892.00E-110Predicted PRP38-like splicing factor
nrgi|672143835|ref|XP_008795803.1|1.42E-138PREDICTED: pre-mRNA-splicing factor 38 [Phoenix dactylifera]
Swissprottr|Q8LB54|PRP38_ARATH7.00E-115Pre-mRNA-splicing factor 38
trEMBLtr|M5W7Z5|M5W7Z5_PRUPE1.00E-140Uncharacterized protein {ECO:0000313|EMBL:EMJ09867.1}
TAIRAT2G406502.00E-110PRP38 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002249077494915522-
Transcript Sequence

Network for GWHGAAEX008136

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03371.14PRP38101733.00E-60
PF12871.6PRP38_assoc1802714.40E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12849PRPF38A Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms48.680
SRR2545915Juvenile tuber35.820
SRP108465SRR5643513five period of Gastrodia elata54.360
SRR5643514five period of Gastrodia elata49.470
SRR5643515five period of Gastrodia elata47.740
SRR5643524five period of Gastrodia elata47.320
SRR5643525five period of Gastrodia elata78.850
SRR5643528five period of Gastrodia elata65.020
SRR5643658five period of Gastrodia elata57.460
SRR5643659five period of Gastrodia elata76.560
SRR5643660five period of Gastrodia elata85.050
SRR5643661five period of Gastrodia elata81.050
SRR5643662five period of Gastrodia elata75.660
SRR5643663five period of Gastrodia elata73.730
SRR5643664five period of Gastrodia elata73.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_148.540
SRR6049655Rhizomagastrodiae_C368-T10_good_158.470
SRR6049656Rhizomagastrodiae_C368-T07_good_153.920
SRR6049657Rhizomagastrodiae_C368-T07_good_153.140
SRR6049658Rhizomagastrodiae_C368-T04_good_166.750
SRR6049659Rhizomagastrodiae_C368-T04_good_156.400
SRR6049660Rhizomagastrodiae_C368-T01_good_158.680
SRR6049661Rhizomagastrodiae_C368-T04_good_153.000
SRR6049662Rhizomagastrodiae_C368-T01_good_161.280
SRR6049663Rhizomagastrodiae_C368-T01_good_170.800
SRR6049664Rhizomagastrodiae_C368-T10_good_157.310
SRR6049665Rhizomagastrodiae_C368-T10_good_157.310
SRP279888GastroGastrodia elata tuber 65.68
JuvenJuvenile tuber58.97
Mother_GastroMother tuber of Gastrodia elata 50.02
Mother_JuvenMother tuber of Juvenile 51.10