Gene detail

Detail information of GWHGAAEX008138/evm.TU.scaffold_21.174

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|530780041\|ref\|YP_008431845.1\|	2.00E-24	replication protein C [Thermofilum sp. 1910b]
KOG	KOG1969	0	DNA replication checkpoint protein CHL12/CTF18
nr	gi\|743790186\|ref\|XP_010923107.1\|	0	PREDICTED: chromosome transmission fidelity protein 18 homolog [Elaeis guineensis]
Swissprot	tr\|Q2R2B4\|RFC1_ORYSJ	2.00E-20	Replication factor C subunit 1
trEMBL	tr\|M0T8Z2\|M0T8Z2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P21440_001}
TAIR	AT1G04730	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	4964824	5034948	-

Transcript Sequence
>GWHTAAEX008138 TGGGGTTTTATTTAGCCACGGAAACGGCGCTTATTGGTTTCCCGCCAAATTACATCCGCTTCTCCCACAGCTTCAAGGGTTTGGTTAGGGCACCAACATGGAAGCCATGATGGATGATGAGCTGCTGATTCCCCAAGCCGAGGAGCTTGAGTGGCTTGAAGCCAACAGCTTTCTTCCCGAATTCGAAGAGGAAGAGAACTTTTCCATCAACGAAGAAGTGACAGGGGAAAATAATGCTGATATCCCAGCTCTTGCTGAATTTGATCCTCACCCACAGGAGAGTGAGGTCACCAGGAAGCGTGTATGGTCTGAAGAGAACGAGGGATCAGAAATTATTGAAGAATTTGTCCCGCATGAGGAAAATAGATGTAAGAGAAGATCTTTGGGATTAGCGGAGGAGGATCAAAACGAGGATTGGCTTCATTATTCCCCGCGGAAGGCAACAGTTGTTCATACTGTATCAGAGACTAATGATCTGATGGCGGAAGACTCCGTCCAAGAAAAGATACTGTCTAAATTTGCCGTGGAAATTGAAGGAGATTTTATACCTGTGACACGACCGAATGGTGACCGTGTATATGCTAAAATACAATCAAGCAAAATTGCTGACGGAGGCGCAAAAAAGCTGAGAATCGAAAGATACAACGATGGCCTTCTTTCTGAGCCCATTGACATCATACTACAAAAATTGGACGATAAGGCTTTTTTGAAGGCCTTTGAAGAAAAGGAGCACTCATCATGTTACCTCACTTATTCAGAAGCGCCAAGTTTCAGTGAGAAGCTTTGGGTTGAAAAGTATGCTCCATGCTTTTTCACAGAGCTTCTAAGTGATGAACAGACTAATAAAGAGGTTCTTTTGTGGCTTAAGCAATGGGACTCATCTGTATTTGGCTCTCAAGTTAGGATGACCACTGATGACGTTTTTTCTGCTTTGAGGCGTCATTCCTCAGCGGTTCAACATGGCAAATATTCAGACAGCAAGCCCTTCTTTGGGAAGGGTAAAGTGGATCCTTTTAGATATCATAACATGAATTCTTGTAATGTGCCGGATGGAAAAAGTGAGAATGTAATTGTTTATTCTGAATCATTGACCAAGAAAGCTACTGTCGATCATCCTCCTGAGCACAAGGTGCTTCTACTCTGTGGTCCTCCAGGCCTTGGAAAGACAACACTTGCACATGTAGCAGCTAAACACTGTGGATACCGAGTTATAGAGATAAATGCAAGCGATGATAGATCATCTTCAACACTCGAGTCAAAAATCATTGATGTAGTCCAGATGACCTCTGTCACTTCTGATGCCAAACCCAAATGTTTGGTTATTGATGAAATTGATGGTGCACTTGGTGAAGGGAAAGGTGCAGTGGAGGTCATTCTAAAGCTGGTGGCTGCTGATAAGAAAGCAAATTTTGAGAAATCTAATTCCACAGAACACTCAATATCAGAAAAGCATACCTCTAGAAAAGGGCAAAAGTCTGCTTCACTATTAAGACCTGTAATTTGCATCTGCAATGATCTTTATGCACCAGCTTTGAGACCACTGCGACAAATTGCAAAGGTTCATATGTTTGTAAAGCCAACAATAAGTCGTGTAGTGAATAGGCTTAAATATATTTGCAATAAGGAAGAATTGAAGACAAATTCCGTAGCCCTTGCCGCCCTTGCTGAGTTTACTGAATGTGATATACGCTCATGCTTAAACACGCTTCAGTTTCTCCATAAGAAGAAAGAAATCCTAAATATTCTAGACGTTGGTTCTCAAGTAGTTGGTCACAAGGATATAACAAGGAGTTGCTTTGACATATGGAAGCAGATTTTTCAGAATGGTAAATCGAAGCGCAAAAGCAGTTCAACATGTAACTTAGGCGGTCATAAAGATTTTGAGTTCATGTATGCCCTTTTGTCTAACCGTGGTGATTATGACTTGACTATGGATGCTATTCAGGAAAACTTTTTAAAAGTTTCTTATATCGATCCATTGATGAAAAAAACTGTTGCATGCCTTAACTTGCTCGGTGTGTCTGACTTATTCCATCAGTTTGTCATGCGTACTCAACAGATGTTTCTCCATGCATATCAGCCTCTTCTTGCAATTACCATCAGACATTTGATTGCACATGTTGAGAAGCCAATCATCGAATGGCCAAAGTCTATACAAAGATGCCGAACAATGTCTATAGAGAGGAAGGACTTGTTGAAGCTCTGGCAAAACAAAATACCACCATTTTTCGCTAGGCATCTTTCAATCAAGTATTTCACTGAAGATTTTGTCTCTCTTTTTTTGCATATCCTTGTCCCTCCAACTTTGAGGCCGGTGGCCTTGCATCTATTTTCTGAGAAGGAGAAGGATGATCTAGCACAGCTAGTGGATACCATGGTTTCTTATTCAATTACATACAAAAGTTCCAAAGCTGAGAATTTGAAGGGCCTTCAAAGACATGGAATCGCTAATGATGTTCCTATTTTGGCTCTTGACCCTCCAATTTGTGACTTTGTCAACTTTAAGGATTATCAGCCTGCACATTCAGGATTATCCCAAGCCATGAAGCAGGTGCTGTTGCAAGAGGTGGGAAAACAGCGAATACTTCGCGAAAACTCAGGAAAATCATTGAATCTTAGTGATGAACAAAGCAAGCAGAGGCAGGCTTCAGCTGTTGCAAAGACAGAAGCATTGCATGGGGCTATCACTAATAAATTTGCGCCAGTTGACGGCAGCAGTATGATAAAGCTTAAGCTGTCTAATGATGTCAATAACAGAAGCATCCCTGCAGAAGCTCCTGCCGGCTCAAAGCAGCCTGCTAATAACCCAGCTAGTTTCTTTGACAGATTTAGGCAAAGATATAACATCGATCCAAAAAATAATAATGACACCAATTTGAAGAAGGCTTCAACTGCAGAAAGAGATTATCGACCATTCCTCTTCAAATACAATGAAGGTTTCACTAACGCTGTGAAGAGATCGGTTAAAGTACGTGAGCTGTTGCTTTGATGCAATTTTTTATAGGGATATTTACTTGAATAGCGCCAAAATATTTGTAATTTTATGTAAAACACTTATAATAATCTCATCTCTTAATAATTGTAAGTGTTTTGGTTGTTAAATTAGTATGCTTTATAGATAAACTATAAAAATTGGGTGGTTATGTGAGTAAATGCCTTTTGTTTGTATATAGTTACATAATGTTCTTATTTTGTATTTTCTTAAGCTAAACAGTGTCCAT

Network for GWHGAAEX008138

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	346	421	1.60E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.290
SRP064423	SRR2545915	Juvenile tuber	34.620
SRP108465	SRR5643513	five period of Gastrodia elata	7.610
	SRR5643514	five period of Gastrodia elata	8.990
	SRR5643515	five period of Gastrodia elata	6.620
	SRR5643524	five period of Gastrodia elata	7.360
	SRR5643525	five period of Gastrodia elata	1.510
	SRR5643528	five period of Gastrodia elata	1.340
	SRR5643658	five period of Gastrodia elata	2.830
	SRR5643659	five period of Gastrodia elata	15.160
	SRR5643660	five period of Gastrodia elata	19.190
	SRR5643661	five period of Gastrodia elata	12.660
	SRR5643662	five period of Gastrodia elata	12.160
	SRR5643663	five period of Gastrodia elata	12.020
	SRR5643664	five period of Gastrodia elata	12.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.060
SRP279888	Gastro	Gastrodia elata tuber	33.26
	Juven	Juvenile tuber	24.98
	Mother_Gastro	Mother tuber of Gastrodia elata	5.30
	Mother_Juven	Mother tuber of Juvenile	13.05