Detail information of GWHGAAEX008141/evm.TU.scaffold_21.178
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434400469|ref|YP_007134473.1| | 5.00E-19 | WD-40 repeat-containing protein [Stanieria cyanosphaera PCC 7437] |
| KOG | KOG4155 | 6.00E-144 | FOG: WD40 repeat |
| nr | gi|743877893|ref|XP_010908032.1| | 2.94E-160 | PREDICTED: WD repeat-containing protein tag-125-like [Elaeis guineensis] |
| Swissprot | tr|Q9FE91|C3H62_ARATH | 6.00E-10 | Zinc finger CCCH domain-containing protein 62 |
| trEMBL | tr|A0A067L1S8|A0A067L1S8_JATCU | 5.00E-157 | Uncharacterized protein {ECO:0000313|EMBL:KDP38440.1} |
| TAIR | AT2G26490 | 6.00E-144 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 5113078 | 5114830 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008141
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 224 | 252 | 0.039 |
| PF00400.31 | WD40 | 258 | 294 | 0.0026 |
| PF00400.31 | WD40 | 360 | 391 | 0.0025 |
| PF00400.31 | WD40 | 400 | 467 | 0.0056 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.580 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.090 |
| SRR5643514 | five period of Gastrodia elata | 0.030 | |
| SRR5643515 | five period of Gastrodia elata | 0.090 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.090 | |
| SRR5643528 | five period of Gastrodia elata | 0.140 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.040 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.42 | |
| Mother_Juven | Mother tuber of Juvenile | 0.37 |