Gene detail

Detail information of GWHGAAEX008152/evm.TU.scaffold_21.197

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|218779469\|ref\|YP_002430787.1\|	3.00E-27	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
KOG	KOG1282	4.00E-132	Serine carboxypeptidases (lysosomal cathepsin A)
nr	gi\|743847092\|ref\|XP_010939013.1\|	2.27E-160	PREDICTED: serine carboxypeptidase-like 18 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9C7Z9\|SCP18_ARATH	5.00E-137	Serine carboxypeptidase-like 18 (Precursor)
trEMBL	tr\|M0SK50\|M0SK50_MUSAM	3.00E-151	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P01330_001}
TAIR	AT1G73300	4.00E-132	serine carboxypeptidase-like 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	5568371	5572335	+

Transcript Sequence
>GWHTAAEX008152 GAAGGCCGGCAACAAGCAAGTAGCGATTCCACCCATCAGAAGATGAAATCACTATCCTTTTTCCTTTTCTTTTTCTTCATAATCTTCTCTTCCTCCCATCCGCAGCTGTGTTATAGCCACTCGAACTCCGTCAAGAATAGGATCACTCGTCTCCCAGGCTTCGATGGGGAGCTTCCCTTTCGTTTAGAAACAGGATACGTGCCCATAAATGAAGAGAGTGGAGCAGAGTTCTTTTACTACTTTGTGGAATCAGAGAGGAATCCCAAAGAGGACCCTATTATCCTTTGGCTAACGGGCGGGCCAGGCTGCTCTGGTTTTATAGGCTTGGCAGTGCATATGGGACCTCTTAATATTCAGACTGACAATTTTGATGGCAACCTTCCTGCATTAGTCATTAATCCTCACTCTTGGACAAAGCTTGCAAGCATGATTTTCTTGGATTGGCCTGTTGGCACTGGATTCTCATTCTCAAGAACTAATGAAGATTATTTCAATGAAGATAATCAAGCTAAGAAACAAATCTATACATTCTTAAGAAAGTGGTTTCTCGATCACCCTAATTTCGTATCAAATCCGTTCTATATGGGCGGTGAATCTTATGGTGGGAAGATGGCTCCACTTGTTTCACATGAGATTGTTGAAGGAAATGAGCAAGGTATTAATCCACAAATAAATTTTAAGGGTTATTTAATTGGCAATCCTTCAACGGTTCAAACGTTAGACAAAAATTATGTGGTTCCGCATGCTTTTGGTCTGGGAATTATTCCTGAAGAACTCTATAAGGCTATACAAACAAACTGTGTCAGTGAAGATTATCAAAAACCAAATAAGGCTATTTGTGCAGCGCACCTGCAAGTCTTTAATAAGTTTGTTTCAGAAATTAACTCTTTTGGCATATTGGAACCTGTGTGTTCTGATGAGCCGCCAACTTCGTTAGTTGGTGTATCAAAGCTGCATAGATCATTGGAAGAGACAACGGATATTTCTTGTATAACTCCAGATTTGCTTGCTAATTATTGGGCAAACAATCATATAACAAGAAATTATTTAAAAATTAAGACAGGAAAGGTGGGAAGATGGCATCGATGCAATTTTAATTTCGCTACATTTAACTACAACCGCAGCATACCAAGCTCAGTGCCTTATCACAAGAATCTAACAACAAAAGGGTATAGAGCTCTAGTGTACAGTGGAGATCATGATTTGAGAATCCCATATTTGGGTACATTGGAGTGGATAAAATCGCTTGGATTCTTAGTGTTGGATCCATGGAGATCATGGCACTCGGGTGGTCAAGTGGCTGGATACACGATGGCATTCGCAAATAATCTGACTTTTGCAACAATTAAGGGAGGGAATCATTTGGCGGTAACTAATAGGCCGATGCAAGGTTTTGATATGTTTGAGAGGTGGATTTCTCAGCGGGCTCTGTGAAGATGTTAGCAAGTTTTATTAGTCAAATGTTTGAGTTTGGATATGAAAAATATTGTGCATAATAAAGCATTTGCATGTGTTTCAAGAGTACATAGCTTAGCTTAGTGTACAGCCCCATGAATTACCATGTAAGTGTAGAAATTATTCTTGGTCATTATTAGAGGTCCCCATATATGTATGATAAAATGTAATTGATTAAGACTTTGATTTTTCTCAATGTTCTCTAACTATCAACTCTTTATGTCATTATTAACGAGCATACTTTAATGTTTTCAATGATCAACATTAAAGCATTTGAAAATTGACTCAAATGGTATAACCTCATAGCAACCAG

Network for GWHGAAEX008152

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00450.21	Peptidase_S10	38	460	1.60E-116

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0004185	Molecular Function	serine-type carboxypeptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	132.560
SRP064423	SRR2545915	Juvenile tuber	323.220
SRP108465	SRR5643513	five period of Gastrodia elata	85.080
	SRR5643514	five period of Gastrodia elata	163.580
	SRR5643515	five period of Gastrodia elata	131.060
	SRR5643524	five period of Gastrodia elata	164.430
	SRR5643525	five period of Gastrodia elata	330.860
	SRR5643528	five period of Gastrodia elata	331.960
	SRR5643658	five period of Gastrodia elata	379.400
	SRR5643659	five period of Gastrodia elata	10.900
	SRR5643660	five period of Gastrodia elata	1.860
	SRR5643661	five period of Gastrodia elata	1.030
	SRR5643662	five period of Gastrodia elata	0.440
	SRR5643663	five period of Gastrodia elata	0.370
	SRR5643664	five period of Gastrodia elata	1.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	105.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	233.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	128.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	133.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	114.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	87.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	235.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	111.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	111.340
SRP279888	Gastro	Gastrodia elata tuber	5.50
	Juven	Juvenile tuber	16.88
	Mother_Gastro	Mother tuber of Gastrodia elata	4,887.90
	Mother_Juven	Mother tuber of Juvenile	2,109.87