Gene detail

Detail information of GWHGAAEX008154/evm.TU.scaffold_21.199

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743881749\|ref\|XP_010908979.1\|	1.56E-117	PREDICTED: F-box protein SKIP22-like [Elaeis guineensis]
Swissprot	tr\|Q9ZUB8\|SKI22_ARATH	3.00E-54	F-box protein SKIP22
trEMBL	tr\|M0TMQ3\|M0TMQ3_MUSAM	8.00E-97	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P05000_001}
TAIR	AT1G23780	1.00E-53	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	5598017	5605121	+

Transcript Sequence
>GWHTAAEX008154 ATGTCGTCGTTGAAGCTTCGAATTCGATCGTCAAAGACGAAGGAGACTATTCGAATCGATATCTCCAACTCCTCCTCCTTCCTCGATCTCAAAACCCTAATTTCATCAAACCTCTCTTCCGCTAAACCAATCCCTCTTGAATCTATTCACCTTTCTCTCAATCAAACCGATGAAATCGCATCTTCCCCTGAGGTACCCATCCACACCCTCGGCCTTATCTCCGGCGATCTTATGTACTATTCGATCGACAGCAACCCTAATTCCCCCTCCGAAACGTTAAACCCATCTTCAGTCCCATTGGTCGAAACCCTAGTTTCACTTTCCCAGGCACCGGAGCAGCTCACTGATGATATGGAAGTCGAATCAGAATCGGATCCTTATGTGCTGGGGAAAGTGGTTTCTGTTCCGTGCCTCCTTCGTAGAGTTATGGAGGCGGAGAAGGGAAAAATTAAGGGGGATTTGGGGCTTTTGGTGGCCGCTATCCATGCTGTTTTGTTGGAGTCCGGATTTGTTGCGTGCACTGATGGCGGCGGATCTTCTCTGCCCAATGGATGCTCGTTGGCGGGTGGCCTGGTTTCGGTAATGTACACTCTTCCAGATCTTCTAGGTTGTAGTAATTTGGAAGACATTAAAAACGTTCTCTTGAAGTTTTCCACGGTCGGAAATCACATTTCTGTTTACGGATTCGTAGTTGGAGCCCTCCCAGATGTTCACCGTCTTTCTCTGGTTTCTTCCAAGCTGACTCCTTTGTTAATCTCAGCGGTGAATGAACTTAGCGGTAAAGAACAGGAGGATGTTTTCCAGTTTTGGAAAACTGTGAAAGACCGTCTTTCTGTGCCATTACTTATTGATATATGTCAGAAGAATGGATTGGATCTTCCGCCTTGTTTTATCCGGCTTCCCACCGATCTCAAATTTATGATTGTGGAGTTCTTGCAAGGCATTGACCTTGCAAAAGCTGCATGTACTTGCTCTGAATTGAGGTATCTTGTATCCAATGATGAACTTTGGAGGTGGAAGGTTTTGGAGGAATTTAATATGTTGGTAGTAGAAAGCACAGGAGGGTCTTGGAAGAGCAAATTTGCGAAATTATGGGTGAAATGCAAGAAGCCCAGGACGGAAAGGGATAATGCTTTGATTTCCTATATTCAAAGCCCTAGGATTACAAGGGTGCCACATGTTCCTATTTCCCAGAGGTTGCCTATGATTGGTGGAGATTATGATCATTTCCCGGCCATTGGCAATTTTGGTTCCTTCCAAAGAACGAGATTTAGCCAGCACCCAGCAAGACGAAATTTTTCACCAAATTGTAATTTGGGCGGAGATTCCATGACTTTCAAGCTTTCCATTCATAAGCAAGCCAGCAAAACAAATAAGACTGACAATGTGTTGCTCGAGAGACCTGAAAGTAGCTATGAGAATGGCCTAAATTATTTGTTGTGGGAACCTATGTGGATAAATAAACTTCTTAAGATGATGGATAACATGAGCACTTTTAAAAATTCAGGTATAACAACAGAGCATGTTATTCGACAAGTGAAAAGCCAAAGATGGAGATGGGACATAATTTAGAAGATGAGGGGTTTGTCAAGTGCTAGTTGGAATGAAAGTGAAAAAATTATTATGCTCGGTCAATTGGAGACACTCCAAATTCCATAAGTATTTGATCATAGCATCTTACATCCCAATATATATTATTGGAATTAATAACTCATAAATTACTTGTAATCAGGATGCAGCTCGATTTTATAATTCATCAATACTTGGGTATGATCTCCTTGAAAGGGTGTGCAGAGTAGGGCATGCACTGGATGTTGGGCAAAGGATAACATTGATTCTTTCTTAGATATGAATAATGTCATTATTCTTGAAGAAGAATGTTGTTTCTCAAGTGACTTTTAGCATACAGAACTATATGATGTTGAAAACAACCTCAAGGACGATTGCCACACAAAAATAAATCGAAACCAAATCTGCTGGGGCTCTATCAATTTGAGAGAAGCCCATAAAAAAGGGTAAAAGAGCTCGTGCTGAGCCCTACCATCACACAAAGGTTAATGCATTGACAGCCATAGCTGCTGGCGTCCTAAAAATGGCAAATGAGTTTGACACGGCAGGACACTGAGATAATCTTTTAGGAAATGTGTATTCTTGTTAAATTGGCTTGAGGGCTTTTCAAAATTGGACCCTGAAAGATGCTTCTTGTTTATTGCTTCTGCAGATTTATCTGTTACATCACCATTTATTTTACGACTACGAAGGGCAAAAGAATTGTTCACGAGATCCTGCAGCAAAATCCAATATGAGATGTCCCCTCGATGATGTTGTTTTTTTGTGTCAATATATATTTGCAATGTATTGATCTATTTAGATCAACCTTTTTGTAGTTTTTGATGATTGATTTTGACAAGAATATATAT

Network for GWHGAAEX008154

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.32	F-box	296	340	8.70E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.060
SRP064423	SRR2545915	Juvenile tuber	22.410
SRP108465	SRR5643513	five period of Gastrodia elata	24.310
	SRR5643514	five period of Gastrodia elata	23.920
	SRR5643515	five period of Gastrodia elata	25.670
	SRR5643524	five period of Gastrodia elata	25.300
	SRR5643525	five period of Gastrodia elata	24.690
	SRR5643528	five period of Gastrodia elata	27.360
	SRR5643658	five period of Gastrodia elata	27.000
	SRR5643659	five period of Gastrodia elata	29.860
	SRR5643660	five period of Gastrodia elata	25.710
	SRR5643661	five period of Gastrodia elata	27.190
	SRR5643662	five period of Gastrodia elata	28.520
	SRR5643663	five period of Gastrodia elata	26.230
	SRR5643664	five period of Gastrodia elata	28.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.270
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.310
SRP279888	Gastro	Gastrodia elata tuber	28.60
	Juven	Juvenile tuber	38.89
	Mother_Gastro	Mother tuber of Gastrodia elata	40.60
	Mother_Juven	Mother tuber of Juvenile	41.14