Detail information of GWHGAAEX008158/evm.TU.scaffold_21.203


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672168995|ref|XP_008804517.1|3.17E-11PREDICTED: F-box protein At5g07610-like [Phoenix dactylifera]
Swissprottr|Q94A64|FB251_ARATH3.00E-06F-box protein At5g03970
trEMBLtr|M8AYS4|M8AYS4_AEGTA1.00E-08Uncharacterized protein {ECO:0000313|EMBL:EMT06825.1}
TAIRAT5G039709.00E-06F-box associated ubiquitination effector family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002256640615665650+
Transcript Sequence

Network for GWHGAAEX008158

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.32F-box22530.00012
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.430
SRR2545915Juvenile tuber8.400
SRP108465SRR5643513five period of Gastrodia elata9.570
SRR5643514five period of Gastrodia elata8.950
SRR5643515five period of Gastrodia elata10.450
SRR5643524five period of Gastrodia elata8.240
SRR5643525five period of Gastrodia elata22.690
SRR5643528five period of Gastrodia elata13.120
SRR5643658five period of Gastrodia elata43.220
SRR5643659five period of Gastrodia elata14.110
SRR5643660five period of Gastrodia elata12.900
SRR5643661five period of Gastrodia elata39.560
SRR5643662five period of Gastrodia elata11.250
SRR5643663five period of Gastrodia elata19.130
SRR5643664five period of Gastrodia elata4.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.960
SRR6049655Rhizomagastrodiae_C368-T10_good_120.700
SRR6049656Rhizomagastrodiae_C368-T07_good_111.670
SRR6049657Rhizomagastrodiae_C368-T07_good_17.680
SRR6049658Rhizomagastrodiae_C368-T04_good_111.610
SRR6049659Rhizomagastrodiae_C368-T04_good_111.520
SRR6049660Rhizomagastrodiae_C368-T01_good_18.170
SRR6049661Rhizomagastrodiae_C368-T04_good_112.660
SRR6049662Rhizomagastrodiae_C368-T01_good_112.200
SRR6049663Rhizomagastrodiae_C368-T01_good_111.010
SRR6049664Rhizomagastrodiae_C368-T10_good_117.500
SRR6049665Rhizomagastrodiae_C368-T10_good_117.500
SRP279888GastroGastrodia elata tuber 6.77
JuvenJuvenile tuber12.23
Mother_GastroMother tuber of Gastrodia elata 19.23
Mother_JuvenMother tuber of Juvenile 14.24