Detail information of GWHGAAEX008163/evm.TU.scaffold_21.213
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186681693|ref|YP_001864889.1| | 5.00E-67 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| KOG | KOG0266 | 2.00E-153 | WD40 repeat-containing protein |
| nr | gi|695005970|ref|XP_009389455.1| | 0 | PREDICTED: WD repeat-containing protein 5-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 1.00E-91 | Protein Mut11 |
| trEMBL | tr|M0SMT9|M0SMT9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P10720_001} |
| TAIR | AT3G49660 | 2.00E-153 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 5848720 | 5878888 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008163
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 37 | 72 | 2.90E-09 |
| PF00400.31 | WD40 | 81 | 114 | 5.70E-08 |
| PF00400.31 | WD40 | 119 | 156 | 6.60E-09 |
| PF00400.31 | WD40 | 160 | 198 | 1.50E-09 |
| PF00400.31 | WD40 | 203 | 241 | 0.00013 |
| PF00400.31 | WD40 | 245 | 286 | 6.40E-06 |
| PF00400.31 | WD40 | 292 | 329 | 3.40E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 47.160 |
| SRR2545915 | Juvenile tuber | 43.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.270 |
| SRR5643514 | five period of Gastrodia elata | 31.380 | |
| SRR5643515 | five period of Gastrodia elata | 31.000 | |
| SRR5643524 | five period of Gastrodia elata | 32.640 | |
| SRR5643525 | five period of Gastrodia elata | 31.580 | |
| SRR5643528 | five period of Gastrodia elata | 42.130 | |
| SRR5643658 | five period of Gastrodia elata | 32.140 | |
| SRR5643659 | five period of Gastrodia elata | 42.980 | |
| SRR5643660 | five period of Gastrodia elata | 51.050 | |
| SRR5643661 | five period of Gastrodia elata | 51.510 | |
| SRR5643662 | five period of Gastrodia elata | 39.170 | |
| SRR5643663 | five period of Gastrodia elata | 37.180 | |
| SRR5643664 | five period of Gastrodia elata | 40.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 65.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 45.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 45.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.55 |
| Juven | Juvenile tuber | 40.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.09 | |
| Mother_Juven | Mother tuber of Juvenile | 31.96 |