Gene detail

Detail information of GWHGAAEX008167/evm.TU.scaffold_21.218

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1049	1.00E-80	Polyadenylation factor I complex, subunit FIP1
nr	gi\|672124596\|ref\|XP_008785688.1\|	0	PREDICTED: uncharacterized protein LOC103704249 [Phoenix dactylifera]
Swissprot	tr\|F4KDH9\|FIPS5_ARATH	5.00E-85	FIP1[V]-like protein {ECO:0000303\|PubMed:16282318}
trEMBL	tr\|M0TL99\|M0TL99_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P27630_001}
TAIR	AT5G58040	1.00E-80	homolog of yeast FIP1 [V]

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	6133775	6166500	-

Transcript Sequence
>GWHTAAEX008167 TACACGATGATCTCCATTTTACTTGCTAGAGCCTAAGCATCTCGTAGCCTTTCCTCGTGAGCGCCTCGACATTTACAGGCCCAAAGAGAAAAAAGGCAATCAAAGAACGCCGCTTTGCTACTTTAAGCGCATTCGTTTCTCGCATTTCCGTAGATGCCATATTAATCGCCATGGACAACGAAGACGGGTTTGGCGAACTCTACACAGATGTCCTTGGGGTCAATCCCATCCACACGCCATCCCCGACCACCCCAAACCTTTTCTCAGAAAGCGACGACGACGATGACGAAGAGGGCGACAAGGTTCTGTTCGAACCCTCATCTTTAAACCCCAAATTGAACTCCGACGTTGATTGTCTGCGAGGTTGCGACGTCCGGGTGATTGAAGAGCCAGCGATTTTGATCGACGATTACGAAGATGCGGCGGTTTCCAGGGCTTCTAGGGACGCGGTGGCGCATTCCTTATTCAACATAAATGGGATTAAAGTTTCTGCGGAGAAGACAGAGGATTTTGTTGATCCGGATCAAGAATCGTTAAATCCTGCTGTCTCCAACAGTGGGCTTGTGAAGGATTCTGATAGTGAAGAATGGGATAGCGACAGTGAAGATGATTTGCAAATTCTTCTCAACGAAACTGTGCATGAAACTCACGTGGAGAGAAGAAGGGGTGTGGAATGTGATGAGGACGACGATGACGGGGATGAGGATTTGGTTATTGTTACTGACGAGGATCATCATATTCATCATCATCATCATCAGGCTATGGAGCAAGATTGGGGAAATGAAGCAGTGCAGCCTTCCACAGATAGCGAAAAAAAAGATATTGAAGCTGTAAAAGCAAATGTTGCCAATTCAAAAACAAATGGTCCGCGGATAGGTTATAGTAATCATGGTTTTTATCAGCAGCATCATTTAAATTTTAAGTATGTAAGACCTGGTGCAGCACCAACATCAGGAGGTTCTGGCACTGCTGCAATGGGTGCTCCAGGTCAAGTTCGTTCACCTATCCTTGGTTCTATGGCTTGCCGTGCAAGAGGAGCTTGGAAGCCACTGGGTGGAAGAGGCTTTCCTAATAGTAGCTTTCATTCAGGCTTTGGTTTGCCAGCTTGGGGCAGTAGTGCATCCAGCCGTCCTTTTGGCAGTGGTTTGGATTTTATTCTGCCATCACACAAATGTGTATTTGACATTGACATAGACAGTTTTGAAGAGAAACCCTGGAAACATCCTGGGGTTGATGTTTCAGATTTTTTCAATTTTGGAATGGATGAAGAGCATTGGATTGAGTATTGCAAGCAAGTGGAGCAATTACGGCTGGAATCCACCATGCAAAGCAAAATTAGGGTCTATGAAAGTGGCCGAATCGAGAAGAGCATTGATATTTCTCTCTCACATCAGGACCATGATCCAGATTTACCTCCTGAACTTGCCACCAAAGCCACTCAACATAGCATGCCTCCTGATAGCAAAAGCCATGTTAAAACAGATAAGGGGGACATATGTGGACAAGAGAGTAGAAGTGTGCGCATGCAACTCTCGCTTCCAACTGGGAGAGCAATTCAAGTAGAAGGTGGATATGGTGAACGTCTTCCCTCTATAGATACCAGGCCACCAAGAATTCGCGACTCAGATGCAGTTATTGAGATTGTCCTGCAAGATAGTCTAGAAGATTCCACAATCTCTAATGGTCCGCCAGAGAGGCAAGGGAATAATTTTGGTGGAGAGAATGTAAAAGGATTTCATGATGTTGATAAAGATGATCGGCCCATTACATCAGTACGCTATCGTGATTTTCCCCGCACTTCAAATGGGAAGCAGAGGGAATCAATGGCTAGAAGAGTTCCCCTTTCCCTTGATAGGGATAGTATTTTGCCTTTCCATTCAGAGTTACATCTCAGGAACAGCTCTGGTCCTGAAATACAAAGTCCCATGAACATTGCTAGATCATTTGGAGCACAGCACGTTGGAAGGTTTCCACACGGAACTTCAGGCAGAAACTTCGGTACTAGTGAGTACTCGAATGAAACTTTCCCAAGTGGAAGTGTCCATTTGGATATGCATGAAGGACATCCTAAAGGAAAACCAGCAGATGGGATTGACACCAACCAGACTTGTGCATTGTCACCCTCTAATGATGCAAAGGTTACAAGGGAGTTCAGCATGGAACCAAATGATATTGAACGTGATGATAAGCTCACTCTAGGTGACTCTCTTGAAGGGAATGTGGAAGAAGCTTCAGATTTTCGAGTGTCAAGTGAAACTATTAATAATGATGACTCGATTCATTTTGCAAACAGGAAAAAATTGAGTTCATGCATTGAACAATTAACAGTTCGGGATCAAAGTGATGTGAGTGATTCAAAGCTTTCGCATAGTGGTGATAGCCAAGCAAATTTTAGAAGCAGCAGGGACCATCAGAAAACGTTTGAAAATGATGATGAAGTAATGCAATATCGTCCTTCGAAGCGCAAGGGAGATTACCACAAGTATCATGGAGAAGAAGAGCATAGATTAAGGGATGATTATGGTTCAGATGATCGTTGGGACATGCAAAGAGGCGCAACTATATCCAGAGAAAGGGAACCCGTGTTTAAATCATATGCACACAAGAATTTAGATTTTGGTTCCGAACAGGCTTTTCACTCTAAGTGTGGTGAAGTTTGTGCTAGAGAGGAGGATAATTCTAGTGGCGCTTGGCAGAGGAGTGAGAATGGCTCGTGCTGTAAAAATGTGAAGGATAAAGATGTTGGAGGAGGACATAATGTTCAAGTAAAACCAAGGGAAAGAAACAAAACTAAAAATAATATAAAGAAAAGCATAGATGGAGACTGGAGAGGGCATAACAAGAATGATGTCCTTCGACATAGGGAGAGTGATGATGCATTGATGATCCGCCAAGAAAACCGGGAAGACAATAAAAGAAAGCTAAAGAGGGATCCTAAACTCCTGAAAAGGGAGATGGGTGACGATGAAGAGCTTCTGCGTAGTTGCAGGGAAAGGGAGGATTCAAGCCGAAGGAAGAGGGAAAGAAATGATATCATGGATTACAGGAAGAGCGAAGATGATGCTAGAACAAAGTGTAAGCCCAAGGAACATTATTCTAGTGATCACAAGCAAGTCAGTTGGTATCAGAAGGATATGGAAGAATGGAGACGACTTAAGCTGTCTCATGATGATGAATATTCATTAAATAAAAGGGAAGAAAAACGGTTTACTTTAAGAAGCGGCCGGCTTATAGACGAGACAGTGTCAACTGGAAGTGGAAGGCACAAGGAATGTTTAAAAGTTACAGGATCTGACAAGACCTATCATCATAATGATAGAGGAAGGAACAATGAGCAGTCAAAGAGAGATCGTACTACAGAAGATTATGATGCATTTAATAAAGTTCGTGGAGGTTCTCATGCTAGGGAGAAACGATATGATACCAACGAGAGAAGCATTAGGCATGAAATGTTAAAAGACACTCAATCTGATCATCCTTCAAGGGATATAGGTGGACAGCAAACTCAGAAAAAAAAGCACCATAAAAACTCCAGAAAAATCAAGGATCCTGAACTTACGAGTGAGAGTAGAATTAATGGCAAGAGAAAGCTCGAGGATCACAGCTCTGGCAGTCTCGAGCTAAGCAGCAAGCATCTTGGTACAGAGGGAAGGAAGGATCGGCGCAATGGCAGGGAGCAAACGGAGGCCACATCAGTCGCAGGGAAAGAGGAATTTCGTGCCGCTTCAGACGATGAGCACCCAGAGTCGAGGAGGGGTCGATCCAAAATGGGGCGGTGGAGCAGCCATAAAGAGAGGGACGACAGCAGCGCCATGGAAGCCGACGACTCTTTAGCCTATCGCCCTCGCACGCGGGACGAGACCGGAGACGACCGTGATCGCCACCTCGATACCGCCGCCAAACTCAAAATGCGAAGCGAGCGATTCAAGCTTCCCATGCCCGGCGAGAAAGACAAGGATCCTGCAGGAAATAAGAAAGCCGACAGCGAAGCGGCCGGCGCCGGCGCCGGCGATTTCAAGCTTCAGCGCCCGGCTCGGAAGAGGAAATGGACTGGGACGTGACTGGAGTCATATAGACGACGAACGACGAACGAACGAACGAACGAACGCCGCCATCAAGTGTGATCTTGATTGTACAGAGCTTTGGATTAAATATCGTAACTCTATTATTAATAATAATATTATTATTATAACAACGTTGCTGGGCAGTTCCTTTGGGCACTCACACTGGAAAGCGAGCGAATGTTTGCGCAGCGCTTCTGTCGTTACAGAATTGTATTGTATAGCAGGACTGCCCGTTTATGCTGCTGTTTATATGTTATATTTCTCTTTAATTTCATCTATTGCTGGGAAGAAATTGCTTTTGACATCGGCAAACATCCATTGGCCAAGTGATTATATGTGCACCAAAGAAGATTCTTGTTGAATATGGATGAGCTCTACTTCGGGTAAGAAGAGCTAGCCATGTGCTTTTGATGTGTG

Network for GWHGAAEX008167

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05182.12	Fip1	338	380	1.40E-20

Protein Sequence

>GWHPAAEX008167
MDNEDGFGELYTDVLGVNPIHTPSPTTPNLFSESDDDDDEEGDKVLFEPSSLNPKLNSDVDCLRGCDVRVIEEPAILIDDYEDAAVSRASRDAVAHSLFNINGIKVSAEKTEDFVDPDQESLNPAVSNSGLVKDSDSEEWDSDSEDDLQILLNETVHETHVERRRGVECDEDDDDGDEDLVIVTDEDHHIHHHHHQAMEQDWGNEAVQPSTDSEKKDIEAVKANVANSKTNGPRIGYSNHGFYQQHHLNFKYVRPGAAPTSGGSGTAAMGAPGQVRSPILGSMACRARGAWKPLGGRGFPNSSFHSGFGLPAWGSSASSRPFGSGLDFILPSHKCVFDIDIDSFEEKPWKHPGVDVSDFFNFGMDEEHWIEYCKQVEQLRLESTMQSKIRVYESGRIEKSIDISLSHQDHDPDLPPELATKATQHSMPPDSKSHVKTDKGDICGQESRSVRMQLSLPTGRAIQVEGGYGERLPSIDTRPPRIRDSDAVIEIVLQDSLEDSTISNGPPERQGNNFGGENVKGFHDVDKDDRPITSVRYRDFPRTSNGKQRESMARRVPLSLDRDSILPFHSELHLRNSSGPEIQSPMNIARSFGAQHVGRFPHGTSGRNFGTSEYSNETFPSGSVHLDMHEGHPKGKPADGIDTNQTCALSPSNDAKVTREFSMEPNDIERDDKLTLGDSLEGNVEEASDFRVSSETINNDDSIHFANRKKLSSCIEQLTVRDQSDVSDSKLSHSGDSQANFRSSRDHQKTFENDDEVMQYRPSKRKGDYHKYHGEEEHRLRDDYGSDDRWDMQRGATISREREPVFKSYAHKNLDFGSEQAFHSKCGEVCAREEDNSSGAWQRSENGSCCKNVKDKDVGGGHNVQVKPRERNKTKNNIKKSIDGDWRGHNKNDVLRHRESDDALMIRQENREDNKRKLKRDPKLLKREMGDDEELLRSCREREDSSRRKRERNDIMDYRKSEDDARTKCKPKEHYSSDHKQVSWYQKDMEEWRRLKLSHDDEYSLNKREEKRFTLRSGRLIDETVSTGSGRHKECLKVTGSDKTYHHNDRGRNNEQSKRDRTTEDYDAFNKVRGGSHAREKRYDTNERSIRHEMLKDTQSDHPSRDIGGQQTQKKKHHKNSRKIKDPELTSESRINGKRKLEDHSSGSLELSSKHLGTEGRKDRRNGREQTEATSVAGKEEFRAASDDEHPESRRGRSKMGRWSSHKERDDSSAMEADDSLAYRPRTRDETGDDRDRHLDTAAKLKMRSERFKLPMPGEKDKDPAGNKKADSEAAGAGAGDFKLQRPARKRKWTGT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.070
SRP064423	SRR2545915	Juvenile tuber	42.880
SRP108465	SRR5643513	five period of Gastrodia elata	17.390
	SRR5643514	five period of Gastrodia elata	15.180
	SRR5643515	five period of Gastrodia elata	13.230
	SRR5643524	five period of Gastrodia elata	14.420
	SRR5643525	five period of Gastrodia elata	13.530
	SRR5643528	five period of Gastrodia elata	9.650
	SRR5643658	five period of Gastrodia elata	12.170
	SRR5643659	five period of Gastrodia elata	21.290
	SRR5643660	five period of Gastrodia elata	24.280
	SRR5643661	five period of Gastrodia elata	21.210
	SRR5643662	five period of Gastrodia elata	26.490
	SRR5643663	five period of Gastrodia elata	25.940
	SRR5643664	five period of Gastrodia elata	32.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.920
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.080
SRP279888	Gastro	Gastrodia elata tuber	18.85
	Juven	Juvenile tuber	34.08
	Mother_Gastro	Mother tuber of Gastrodia elata	10.89
	Mother_Juven	Mother tuber of Juvenile	21.21