Gene detail

Detail information of GWHGAAEX008177/evm.TU.scaffold_21.229

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2739	3.00E-72	Leucine-rich acidic nuclear protein
nr	gi\|672124536\|ref\|XP_008785656.1\|	5.74E-103	PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein 1-like [Phoenix dactylifera]
Swissprot	tr\|Q6YSF3\|AN321_ORYSJ	1.00E-75	Acidic leucine-rich nuclear phosphoprotein 32-related protein 1
trEMBL	tr\|M0SHX2\|M0SHX2_MUSAM	3.00E-102	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P26060_001}
TAIR	AT3G50690	3.00E-72	Leucine-rich repeat (LRR) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	6490561	6492866	-

Transcript Sequence
>GWHTAAEX008177 ATGGCTAAGGTTAATTCTTGGATGGTTGAAGCCTGGGAAAGGGTCGTTGAGGCTGCGCTCGATGGGCAGGCAACTCCGTCATCGGAACTCCGGGTTTTGAATCTTGATGGTGCCATGAAATCTCTCCATGGAAGCCTCCCACCGGCCGGGATTCTTGAGAGATTTCCAAGTTTGGAGCATCTCTCGATCGCTAATGTTGGAGCGCTCTCACTGGAAAAATTCCCACGCCTTCGTAATCTTCAAAGACTTATCCTCTCGGACAACCGGATCGCTGGTGGTCTTGAGAATTTGGTGCAGGCTGGGCTGCACTCACTCCGCGATCTTGATCTCTCAAACAACAGGATCCAGTACATCGAGGACCTGGCCCCCCTTGCGAAGCTACACCTTGTTTCTCTTGATCTTTACGAATGCCCTGTCACCAGGGTTGATGATTATCGATCCAAGGTGTTCTCAATGATCCGGACTTTAAAGTACCTGGATAAGCTTGACGCTAATGAGAATGAACGGCCGGAGACTGATGACGAAGAAGAAGAAGAAGACGACGAGTATGATTACGATGATTTTGATCCGGGGAGTGGTGAAGTTGATGGTGATGATCGGGCAGTGAAGCAGACTAATGGTTGTGGAGACTATGCTGATGTTGATGATGTGATTGTAGATGCTGATGAGGATGAAGAGAGTGATGCTGATGAGGAGGAGATAGAAACCAGCAGGAGGGGGTCTGTGAATGGATTTTCTATTGGATCTAGTCACCAATTATCCAATGGATTTCGTGTGGCACATGCTGATGCGGCTTCTGTGGATGGAAATGAAAATGATGCAGAGGAGGATGTGGAGGTTGAGGAGGAGGAGGATGATGAGGAAGATGAGGAAGATGATGATGATCTTGGGGAAGAGATAGATGAGGAGGAAGGGGAAGATACTGATGTAGTTGAAGTGCATGATGCTTTGGATAGTGATGAGGAAGATGAAGATGGGGTTGATGATGTAGAGGTTGATGAAGAAGACATTGATGTAGAGGAGGAAGAAGATGATGATGATGATGATTTAGAAGATGATGATGAGGTGGATTTAGATGAAGAAGAGGTGGGTGTGGAGGATGAGGAAGATGCAGAGCCAGGCAGCTCTGGCAGGTTGGCTAGGTTTGAAGATGAGATTGATGGGCATGAACATGGGGAGGAAGATGAAAATGGAGGGATTGGATTGAATGATGAGAATGGGGAAATTGGTGAGGAGGATGAGCTGGGAGTGGAAGAACGGGATGTTGAGGAAGATTTTATTGATGGCGAAGATGAGGATGATCTTGACGGGGACTATCTCGTTCAGCCAATTGCTCGACCGAACGGCCAATCGCGGCCATCCAATTTCAATGCTGGGATGGATGAAGATGATGACCTTGATCAAGAGAACCATAAGCAGAATGTGACCTCGAACAAGAGGAGGAGAGACGATGAAGGCGACCTCGACGATGATGATGATGCTGCAGACGAGCTAAGGCTGTCGAAGCGTCGTTGA

Network for GWHGAAEX008177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14580.5	LRR_9	70	172	5.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	70.130
SRP064423	SRR2545915	Juvenile tuber	65.140
SRP108465	SRR5643513	five period of Gastrodia elata	85.640
	SRR5643514	five period of Gastrodia elata	87.700
	SRR5643515	five period of Gastrodia elata	70.750
	SRR5643524	five period of Gastrodia elata	82.730
	SRR5643525	five period of Gastrodia elata	88.670
	SRR5643528	five period of Gastrodia elata	68.610
	SRR5643658	five period of Gastrodia elata	85.660
	SRR5643659	five period of Gastrodia elata	55.510
	SRR5643660	five period of Gastrodia elata	68.500
	SRR5643661	five period of Gastrodia elata	56.930
	SRR5643662	five period of Gastrodia elata	63.970
	SRR5643663	five period of Gastrodia elata	61.520
	SRR5643664	five period of Gastrodia elata	68.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	60.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	77.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	62.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	86.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	67.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	68.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	55.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	55.290
SRP279888	Gastro	Gastrodia elata tuber	55.97
	Juven	Juvenile tuber	88.50
	Mother_Gastro	Mother tuber of Gastrodia elata	66.34
	Mother_Juven	Mother tuber of Juvenile	77.14