Detail information of GWHGAAEX008179/evm.TU.scaffold_21.232
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390944042|ref|YP_006407803.1| | 3.00E-52 | pectin methylesterase [Belliella baltica DSM 15883] |
| nr | gi|695046601|ref|XP_009411137.1| | 4.70E-167 | PREDICTED: pectinesterase QRT1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FM79|PME62_ARATH | 8.00E-119 | Pectinesterase QRT1 (Precursor) |
| trEMBL | tr|M0TL13|M0TL13_MUSAM | 3.00E-167 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT5G55590 | 3.00E-118 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 6588505 | 6590100 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008179
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01095.18 | Pectinesterase | 53 | 152 | 1.60E-16 |
| PF01095.18 | Pectinesterase | 184 | 369 | 4.50E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.08 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |