Gene detail

Detail information of GWHGAAEX008185/evm.TU.scaffold_21.241

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|57234222\|ref\|YP_181690.1\|	1.00E-163	DEAD/DEAH box helicase [Dehalococcoides ethenogenes 195]
KOG	KOG4150	0	Predicted ATP-dependent RNA helicase
nr	gi\|743837493\|ref\|XP_010936421.1\|	0	PREDICTED: putative ATP-dependent helicase hrq1 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q0ILZ4\|RH9_ORYSJ	3.00E-10	DEAD-box ATP-dependent RNA helicase 9
trEMBL	tr\|A0A061FY06\|A0A061FY06_THECC	0	Nucleic acid binding,ATP-dependent helicases,ATP binding,helicases,ATP-dependent helicases isoform 1 {ECO:0000313\|EMBL:EOY22146.1}
TAIR	AT5G08110	0	nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	6741195	6824787	-

Transcript Sequence
>GWHTAAEX008185 TAATAATGGAATCGAGATCTCGAGTGGATAGCTTCGCATGAATGAATTGGGGAGAAGAGGCTAAGACCATAAAATTAGCTTTCGCCTTTCTGCCAATTTTTTTTCAAACATTTTATTATTATTTTGATTACTGCGAGCCAAACTGATTCGCACAGCTGATGTTGGTGAAGCCAAACAAGTAGCCCCACTTATAACGGCTCTAGGCTTTCAAATGCCCTACTAGTTCTCTCGGATCGATGAGTTGCATGCACTAAGGCGAGGAAATGGAAAGGGAGATCGAAGTTCGTACACTCGAAGGGGAGTCGACAGTCGTACGAATCTCGCCCGAACGACGGGTATGCGACTTGAGGACTTTGCTGAGGAATTCATTTTCTCCGGCAACCGCATCCCCCAGCTTTTATCTTTTCTTTAAGGGTGCCAAATTGAACTTGAGTAGTCGTATAGATAGCCACAGAATTGAAAGGGGTGAATTCATTGTTCTTGTTCCATACATCAAGAAAAACCAGCAGCTTTCATTGCAACAGGATCCCTTTGAGCAGGATTTTCAGTCTTCAATGAACTCCAATGGGCACTTTGCATCTTCCGCTGCTGACTCTATATGGCATGACATCATGGGTGATATTTTTTCTTTTAGTGACATTTCACCAGAGTGGAGTAGTAACGTCGACAATATGTCGAAAACAAGGGGAACTGTGGATGCTTCTGCTGTTAAAAAGCCTGAGAAGCGGAGGAAGATATCTGATAGTTTTTGTACTATTCAAGATCTCTTATGCTTTAACACCCAAGATTTATTTGACCCACAAAAAAATAATAAGATTTGCCAGCTTGTAGAATCCGTCAATTGCTTATCAGATCCTATTACTGGAATGTGCTTGCTATATAAATATTTTGATAAAGGTCTTCCTGGTGATTGCAAGTGTGCATGCCCATTGTGGCTGAGGAGAGTTCTCAAGACGTTTACTTTTATTAATGTTCTTTATGCCTTTTTTTATTTGCAAAGGAAATGCATAACACTGGGTTTTTTAAAAGGAGTACTTAAACAACCTGACATCTTTGGGCTTGATGACTTGTGCTTCTCATATGTGGAGAAGCTTTCATTTCTGTGTCCAAAGGTTGTAGCTCTGCTAGACAACTTGGAAAATGCTGTAAATAATCAAGAATCAACTATTTCCATTCATGATCTTTCAATTGAATCAACTAATGAGCCAAAGCTTGCAAAAGAGCCAGGAGTTGTTGTTAATGCAGCTAAAAAGAGAATGTTGGCTTTCAGAACTGATTTGCAGATTCTCTTGCAATTCTTCGCGGTGTTCTTATGGATACCTCTTCATTTTTTACAGAAAAATAGAAAATCTACAACTATCATGCCTTATATGCCTTCTTTGGAAGATATTATAAATCTGAAGCGTTCTGAAGCTGTTCAAAGTTGTAGTAATGTTAAAAAAGCAAAGTATGGGACATCCACATCAAGATGTTGTGGTACTGTCCATCTGAAGCCTATTGAGATGATTGATCACCTCAGAAAGGGTATGGGTATTTTTGGGCAGATTGTTCACGTTGAAGAAATTAATGAACAATTAGCTCTCTGTGTGGATGTTCCCGGTAGTCTTGGAGATGTCTCAAAGGCCGCTCTCAAGAAGATAGGAATAACACGATTATACAGTCATCAGGTCGAAGCTTTAAATTCTTTTCTTTCTGGAAAGAATGTTGTTGTAGCAACATCAACTTCAAGCGGAAAATCCCTTTGCTACAATATTCCTGTTATTGACGCTCTCTCAAAAGATAACGACGCTTGTGCCCTTTATATATTTCCAACCAAGGCATTATCACAGGATCAATTGAGAGCATTGTTAGAGATGACAAGTGGATTTGACATTGATTTCAATGTTTGTATCTATGATGGTGATACCTCTCAAATGCGTCGTAGCTGGATACGAGATAATGCTCGTGTTTTGATTACAAATCCAGACATGTTACATCTGTCAATATTGCCGTATCATGCAAAATTTCAACGGATTTTATCCAACCTCAGGGTCATTGTGATTGACGAAGCACACTCTTATAATGGTGCTTTTGGATGCCATACTGCTCTTATTCTGAGGAGATTGCGAAGAATCTGTTTCCATGTATACGGTAGCAATCCTTTGTTCATATTCTGTACAGCAACCTCGGCAAACCCCCGTGAGCATGCCATGGAGCTCGCTGGTTTGCAGAGTGTAGAGTTGATTAAGAGTGATGGAAGTCCCTCTGGACCAAAATATTTTCTACTATGGAATCCACCATTACAGATGGAAGTCAAGGCTAATAAGAGCGCTGTTAAGTCTTTGAATTGGGAGTCTTCCACTAGACGCACAAGCCCAATTTGGGAGACTTCGCATCTTTTTGCAGAAATGGTTCAACATGGTCTTCGATGCATTGCCTTCTGTAAGACAAGGAAGCTCACTGAACTTGTTCTTTGCTACACGCGGGAAATTCTTCAGGAAACTTCATCAGGTCTGGTAGATTCTATACGAGTTTATCGTGGTGGATACACTCCGCAGGATAGGAGGAGGATTGAAACTGATTTATTTATGGGTAAGCTTCAAGGTGTTGCTGCTACAAATGCTCTCGAGCTAGGGATTGACGTAGGGTATATTGATGCTACCTTGCATCTTGGTTTTCCCGGTAGTGTTGCAAGCTTGTGGCAGCAAGCTGGTAGGTCTGGAAGAAGATCAAGGCCGTCCTTGGCGATATACATTGCATTTGAAGGACCCTTGGATCAATATTTTATGAAGTTCCCTGACAAGCTCTTGAGGAGATCTGTTGAATATTGTCAAGTTGACAGTCACAATGAGAAGGTGATGGAGCAGCACTTAGTTTGTGCTGCTCTTGAGCTTCCATTGTCTTCTCAATATGATGAGCAATATTTTGGTCCTTGTTTGGAGCGGGCAATACTTTCCCTGAAGAACAAAGGTCATCTTGTCACCGAACCTGAAGTTTCTGCTATGAAAATTTGGAGTTACACTGGACCTGAGGATAAACCTTCTGCAGCAGTTAGTATACGAGCAATAGAAGCTAATAGATACCGAGTGATCGACAAATCAAGTAAAGAAGTCTTGGAGGAAATTGAAGAAAGCAAGGCTTTTTTTCAGGTTTATGAAGGCGCTGTTTACATGCATCAAGGCAGCACTTACTTAGTCAAATCCTTGGAATTATCAGAAAAGATGGCTTTTTGCCAGAAATCTGACCTAAAATACTACACCAAGACTAGAGATTTTACAGATATTCATGTTGTTGGAGGTGACCTTGCATATTCTCCAGCCAAGATTACTGAATATGCATCGAGAAGGACAACCGCTCAAGTGAATGCATGTTCAGTAACAACAAATTGGTTTGGTTTTTATCGAATTTGGAGATCAAGCAATCAGATATTTGACAAAGTTGATCTTTCTCTTCCTTCGTACTCTTACAATAGTCAGGCAGCATGGATTCGAGTTCCTCAACTAATAAAAGTGGCTGTACAGAAAAACAGCCTAGCATTCCGTGCTGGCCTGCATGCTGCTTCCCATGCTCTTCTCAATGTTGTTCCTATTTATATGATGTGCAATGCTTCTGATATAGGAACAGAGTGTGCCAATCCTCATGAAACTCGCAATATCCCTGAAAGATTATTGCTGTATGATAGACATTCTGGCGGAATTGGTCTTTCTGTACAGATCCAACGCCTCTTTGGGGAGCTCGTGATAGCAGCCTTGGAGCTTGTCTCCTCATGCAGTTGCTCAAACAGTGCCGGCTGTCCTAACTGTGTGCAGGTGCTGACATGTGGCGAGTACAATGAAGTTTTGGACAAAAAGGCTGCTATATTAATTCTCGATGGTGTGCTCGAAGCAGAAAATTCTTATTTTAGTAGCAGCGAGTCTTAACCCGGCAAATCTTCACTCTAAACCCATTGAAATATATAATACCATATCCAGTCCTAACATAACCTCTTTGTTTTCTTTTTCCTATTTTTTTGGGTGAGAATCTTCCATATTTTGTAGCTTTTTACTTAAACAAAGCTCAAGGATTACATTCTTCAGAGGAAGTTTTCCTTTTTTTCTCATGAAATATGCTAAGTGGTTTTCTTATACTTGATATATATATATATATTATTTT

Network for GWHGAAEX008185

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	466	636	2.60E-27
PF00271.30	Helicase_C	708	814	1.90E-10
PF09369.9	DUF1998	1092	1174	2.00E-23

Protein Sequence

>GWHPAAEX008185
MEREIEVRTLEGESTVVRISPERRVCDLRTLLRNSFSPATASPSFYLFFKGAKLNLSSRIDSHRIERGEFIVLVPYIKKNQQLSLQQDPFEQDFQSSMNSNGHFASSAADSIWHDIMGDIFSFSDISPEWSSNVDNMSKTRGTVDASAVKKPEKRRKISDSFCTIQDLLCFNTQDLFDPQKNNKICQLVESVNCLSDPITGMCLLYKYFDKGLPGDCKCACPLWLRRVLKTFTFINVLYAFFYLQRKCITLGFLKGVLKQPDIFGLDDLCFSYVEKLSFLCPKVVALLDNLENAVNNQESTISIHDLSIESTNEPKLAKEPGVVVNAAKKRMLAFRTDLQILLQFFAVFLWIPLHFLQKNRKSTTIMPYMPSLEDIINLKRSEAVQSCSNVKKAKYGTSTSRCCGTVHLKPIEMIDHLRKGMGIFGQIVHVEEINEQLALCVDVPGSLGDVSKAALKKIGITRLYSHQVEALNSFLSGKNVVVATSTSSGKSLCYNIPVIDALSKDNDACALYIFPTKALSQDQLRALLEMTSGFDIDFNVCIYDGDTSQMRRSWIRDNARVLITNPDMLHLSILPYHAKFQRILSNLRVIVIDEAHSYNGAFGCHTALILRRLRRICFHVYGSNPLFIFCTATSANPREHAMELAGLQSVELIKSDGSPSGPKYFLLWNPPLQMEVKANKSAVKSLNWESSTRRTSPIWETSHLFAEMVQHGLRCIAFCKTRKLTELVLCYTREILQETSSGLVDSIRVYRGGYTPQDRRRIETDLFMGKLQGVAATNALELGIDVGYIDATLHLGFPGSVASLWQQAGRSGRRSRPSLAIYIAFEGPLDQYFMKFPDKLLRRSVEYCQVDSHNEKVMEQHLVCAALELPLSSQYDEQYFGPCLERAILSLKNKGHLVTEPEVSAMKIWSYTGPEDKPSAAVSIRAIEANRYRVIDKSSKEVLEEIEESKAFFQVYEGAVYMHQGSTYLVKSLELSEKMAFCQKSDLKYYTKTRDFTDIHVVGGDLAYSPAKITEYASRRTTAQVNACSVTTNWFGFYRIWRSSNQIFDKVDLSLPSYSYNSQAAWIRVPQLIKVAVQKNSLAFRAGLHAASHALLNVVPIYMMCNASDIGTECANPHETRNIPERLLLYDRHSGGIGLSVQIQRLFGELVIAALELVSSCSCSNSAGCPNCVQVLTCGEYNEVLDKKAAILILDGVLEAENSYFSSSES

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.150
SRP064423	SRR2545915	Juvenile tuber	1.210
SRP108465	SRR5643513	five period of Gastrodia elata	2.990
	SRR5643514	five period of Gastrodia elata	4.060
	SRR5643515	five period of Gastrodia elata	3.760
	SRR5643524	five period of Gastrodia elata	4.070
	SRR5643525	five period of Gastrodia elata	3.190
	SRR5643528	five period of Gastrodia elata	2.330
	SRR5643658	five period of Gastrodia elata	3.440
	SRR5643659	five period of Gastrodia elata	2.570
	SRR5643660	five period of Gastrodia elata	2.710
	SRR5643661	five period of Gastrodia elata	2.230
	SRR5643662	five period of Gastrodia elata	2.140
	SRR5643663	five period of Gastrodia elata	2.850
	SRR5643664	five period of Gastrodia elata	2.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.990
SRP279888	Gastro	Gastrodia elata tuber	7.36
	Juven	Juvenile tuber	7.55
	Mother_Gastro	Mother tuber of Gastrodia elata	10.95
	Mother_Juven	Mother tuber of Juvenile	10.67