Detail information of GWHGAAEX008188/evm.TU.scaffold_21.244
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 1.00E-75 | MADS box transcription factor |
| nr | gi|401886017|gb|AFQ31623.1| | 1.10E-132 | AP1-like MADS-box protein [Cymbidium ensifolium] |
| Swissprot | tr|Q42429|AGL8_SOLTU | 4.00E-83 | Agamous-like MADS-box protein AGL8 homolog |
| trEMBL | tr|J7I4C9|J7I4C9_CYMEN | 4.00E-133 | AP1-like MADS-box protein {ECO:0000313|EMBL:AFQ31623.1} |
| TAIR | AT1G69120 | 1.00E-75 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 6959534 | 7007641 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008188
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 4.70E-26 |
| PF01486.16 | K-box | 84 | 172 | 2.10E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.140 |
| SRR2545915 | Juvenile tuber | 107.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.140 |
| SRR5643514 | five period of Gastrodia elata | 1.740 | |
| SRR5643515 | five period of Gastrodia elata | 7.300 | |
| SRR5643524 | five period of Gastrodia elata | 1.730 | |
| SRR5643525 | five period of Gastrodia elata | 32.000 | |
| SRR5643528 | five period of Gastrodia elata | 22.220 | |
| SRR5643658 | five period of Gastrodia elata | 45.470 | |
| SRR5643659 | five period of Gastrodia elata | 265.310 | |
| SRR5643660 | five period of Gastrodia elata | 462.340 | |
| SRR5643661 | five period of Gastrodia elata | 283.940 | |
| SRR5643662 | five period of Gastrodia elata | 55.710 | |
| SRR5643663 | five period of Gastrodia elata | 58.010 | |
| SRR5643664 | five period of Gastrodia elata | 85.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.610 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 91.30 |
| Juven | Juvenile tuber | 268.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.96 | |
| Mother_Juven | Mother tuber of Juvenile | 112.45 |