Detail information of GWHGAAEX008193/evm.TU.scaffold_21.256
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|292655851|ref|YP_003535748.1| | 3.00E-17 | hypothetical protein HVO_1704 [Haloferax volcanii DS2] |
| nr | gi|695020364|ref|XP_009397227.1| | 0 | PREDICTED: UDP-arabinopyranose mutase 3 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6Z4G3|RGP3_ORYSJ | 0 | UDP-arabinopyranose mutase 3 |
| trEMBL | tr|M1H922|M1H922_ELAGV | 0 | Alpha-1,4-glucan-protein synthase {ECO:0000313|EMBL:AGE46030.1} |
| TAIR | AT3G02230 | 0 | reversibly glycosylated polypeptide 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000022 | 7548709 | 7553725 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008193
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03214.12 | RGP | 16 | 350 | 2.00E-179 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT75 |
| Carbohydrate-Active enzymes Family | GT75 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13379 | RGP, UTM | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071669 | Biological Process | plant-type cell wall organization or biogenesis |
| GO:0016866 | Molecular Function | intramolecular transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 84.530 |
| SRR2545915 | Juvenile tuber | 182.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 191.750 |
| SRR5643514 | five period of Gastrodia elata | 177.850 | |
| SRR5643515 | five period of Gastrodia elata | 220.860 | |
| SRR5643524 | five period of Gastrodia elata | 191.240 | |
| SRR5643525 | five period of Gastrodia elata | 109.500 | |
| SRR5643528 | five period of Gastrodia elata | 185.080 | |
| SRR5643658 | five period of Gastrodia elata | 105.980 | |
| SRR5643659 | five period of Gastrodia elata | 202.070 | |
| SRR5643660 | five period of Gastrodia elata | 176.050 | |
| SRR5643661 | five period of Gastrodia elata | 222.990 | |
| SRR5643662 | five period of Gastrodia elata | 196.990 | |
| SRR5643663 | five period of Gastrodia elata | 196.000 | |
| SRR5643664 | five period of Gastrodia elata | 170.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 180.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 218.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 186.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 149.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 111.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 89.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 121.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 140.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 223.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 173.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 238.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 238.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 159.95 |
| Juven | Juvenile tuber | 142.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 127.57 | |
| Mother_Juven | Mother tuber of Juvenile | 149.71 |