Gene detail

Detail information of GWHGAAEX008197/evm.TU.scaffold_21.261

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672181081\|ref\|XP_008810746.1\|	1.95E-152	PREDICTED: uncharacterized protein LOC103722082 [Phoenix dactylifera]
Swissprot	tr\|Q6YYC0\|C3H55_ORYSJ	3.00E-22	Zinc finger CCCH domain-containing protein 55
trEMBL	tr\|A0A068VB56\|A0A068VB56_COFCA	8.00E-92	Coffea canephora
TAIR	AT3G26850	4.00E-35	histone-lysine N-methyltransferases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	7636512	7654932	+

Transcript Sequence
>GWHTAAEX008197 AAATATCGCAAGTCTAGCCCTCGCCGACGGCCTGTTCACAGCGAGAACAACCTAAATCATCGACTCATTTTTTGCTTTTCGGTTCGATACGTCGTCCATATCTTCTCTTAGTTCATCGCTTTCTCCTGTTCCCTCGGCCTTCTTTATTCCATGCTCGCACCGACAGTCCGATTCCACCAGAGACCGACGTTCTTCTCTTCACGCATCAGGCAATATATACAGAGAAGCTGGAAGATTTCTTGACACTTATGTTTCTACCATGAAAAATCTACCCAAATTGCAATCATGCTCATATTGCTAAGGTGTCTCGTGTCATTCAGTAACTTGGATGCCCTTTACATCTATAGGCAGCCATCACTTTTTATTGTGCTGTAGTGATGAGCAAATGGAAAAATAAGAAAAATTGCTTAATGTGTAGCAAATGCTGATTTGATCCCCATAATTTTGGTTCCCTTTTTCCCTAATGATATCTGATAGGGTACTTTTGCGTCAATTCCAGGTGCACAGCCAAGTTTATACTTTTGGTGATAACATCATATATTAAATTAACTTGACAGGAAGGATTTACTGAAAGATGTACAGTGGGCATAGGAACTATACTCCTCAGTTCAGGCAGAGGCCTTCTCCCCACCCTCCTCCTCACCTTCCTCATATTCCTCCTCCTCCTTACCATCAAGCTTCTCCTAGTTCAGTACCCCATTTCCTGCAAGCTGCTCCTGGCCCTCAACTTCCCCCAATTCCTCAAGCACCTCAATTTTTTGGCAGATTGGCTCCACCTCTGGGGCAGCCTGTCCCCTTCACACATACACCTTCAGTGAATTCCACACTACCTTACTTGCAACCACTTCCCCCACCGCCACCCCCATTGCCACCTCCACCCCCTCCACCTCAAGTAAATGGAAGCGCACCTGCAGTGCATTCATATTCACTAGCTAGTCGCCCCATATCCCTGCCATTGCCGCCACCTCCACCTAGGATGCTTCAGCCTGCACTGCAACATAATGCACAGCCCCAAGGACAAATGTCATATCATAGTCTTCAGCCATCCTATTCCACTCACCCACCTCCATGGCCTACTAATTTGCCAAACCCACCTCCTACCCCCCCTAATTTTGAAATGACAGTGCCCATATCATTCCCAGGACAGAATCGTGCAGCAGATGCCCATCCTCCTGCAGTTCCACCTCTGCCACCTCCTCCACCTCCACCGCCACCATCATCTCCTCCACCACTTCCACCATCACCTCCAGCCCCAATCCCTGCATCAGACAGCTTTTCGAGTGATGCTTTGAAAGTTCTTGCTTCAGATTCTAAGGTTGATTCAGAAGCACTTGTGGTTGATAATACATCTGTTTATCTTGTTGATGCTAGTAAAGGTTTTAAAGAGGGGAAAGAAATTGTTGTTGATTTAGAAGCTTCAGAGAACCTTTCATTACCTCCACCAAGACCAGATGAAACTATCATTCGGAGCATCGAGGTCTTGTGTCAGTTCATTGTGAAGGTTGGGCCTGATTTTGAAAATACTGCTCGAGCAAAAGAGGCAGGGAATCCACAGTTTGCTTTCTTGTTTGGTGGTGAACCTGGCAGTGCAGCTGCCATTGGGCATGAATATTTTCAGTGGATGAAAAGGAAATATGTTTTTGAAGCGGAGTTTCATAAGGGCCTCAAGGGCATTGCCTTACCTGCAAGCACTATGACAACTGGTGTTTCTTCGCAATCTGGAAACTTGCACTGTGTTGATTTGGCGCATTCTCCTGCTACATCTGACATTGACATGGAGGATGATATCACTCCAGCTGACATAAGCAAAGGTTTCAATATTAAGAATGAAGATTCTACTATTTCAACTCATGTATGTTCTTATGCGCATGAAAATGTAAAAGAACAAATACATTCTGAGATTTATGTAGGCATTGGAGCCTCTTCTCCTATTGTGCCTGTTATGGATGCCGAAGATGAGAAAGAGTTCTCAGTTTTCGAAGATGTAAGCCCTGAGAGGGGTTCTCCTGACACTGCTGACCCAGATGGCATAACATATTCATCAAGCAGATTCCCTACTGGAGATGCTATTAAGGGGAAGGTTTTACTAAATACCGAAGATAAACCTCAGGAGGCAACAGGGGTGTTTCTCAAATATGGAAGTCCTTTCCGCCTGATACAGGATTATGCTTCAGATGAAAGTGATGAAAATGTTAAAAGTGGTGATGCCGAAGACTTTCACCCTGTGAGTCCTCCAGCCACAACAGTAGTTATTTCAAGATTGAAGCAAGAGAAACCTTCTGAGTTATGCTCAAATTTTGATGCTCAAGATTTCACTACTGCTGGAAATGAATCTGTATATAAAACTACTTCTGGTCAGCATTTCCCTTCAACACCACAAGAAGTGCCCACATCCACAGAAAACACAATAATGCTGACCAGATTAAGCAAGCTTAGTTCAGGTCAACATTCTCCTTCAATGCTACTAGAAAAGATTTTGTCTCAAGAAAAAACAGTACTGTCGATCAGCTTAAACGAGTGTAACACAATGAGCAGAAACAATGATGCCGATATTCATCAGGCAGAAAAATTATCAGAAGATGGAAGGAAAACACTGGGGCCTACTTCTGAGTATGATGATTTGGATGAAAAAAAATTAGATGTTGATAAAAAAACTGAGTTTTTTTCAGGGAGTGTAATGGAGCAGCAGGTTTCACTTGATGTTGATGAATTTGGGCGTCTGATAAGAAAGGGTGCAAGCGGTAGTGAATCTGATGGAAGTCATTATACTGAGAAGCATGGTAAGAGGGGTAGGAGTCAAAACAGGAGCCTGAGCAGGTCGCCCCATGGAAGTAGGAAGCGCTATAGGAGTCGTAGTGCAAGGAGGAGAGATAAGCGAAGCCATTCTCACAGCTGGTCCCCCAAAAGGAGGAGCAAGTCTCCCTCGTCTTTCAGAAAGAATATTCCTGCAAGACGAATCCGTGATCAGCCCCCTGAATGTTTCAACTTTAATCGTGGCCGCTGTTTTTATGGAGCTTCCTGTCGTTTCCTTCATCGTGATTTTGCACAGCACATACATTCGCAACAGCGCCACCAAGATTCACGAAAATCTCGGTATTTTGATGGCTCTGACGATACATCCTTGTCAAGAATTAATCGGCGTGATAATACTGGTGTTGAAGCGCATATTGAAAAGAACAACAAATTTGTTGAGCCAAGGAATCATGTAAAACATGTTTACCAAGGGCAATCTGATTCTAAAACACGAACTGTTTCTGGTCAAATCTCAGAAGGAAAAGATGAACAAGCGCCAGCATCAGAAACAAAAGCTAATGCGGACCAGGTTTCTCAGGAAATGATTAGCATGGAGCTTGAACCATCAGGTGGAAAAGGCCCAGTTAAGCCCACACTTAATTTTGTTGAGGAAGAAAGCACTCAGCTGCTGTTGGATTCCTCCGAGCCTCAACAAGCTGACATCTTTCAGCTTTTTAGTTCTGATGGTAAAGATTCTTCTTTTTCTGAATTTCCCAGCTCAGCTGATGCCGTTTCATTACAACCTTCTCTGTCCACAACTGCCAATGCTATAGAAGCTAAAAAGTGTAGCCAACATACTCTCGATCAAGTTTCATCTGTGTTGCCACTTTTATCTGTTCAAACTAATTACTCTGCAAATGATCCAATCCAGGCCTTAAATTCGATCAATGTGGACCAAAGTAATGCAACTGAGGCAACTTCAAACCAAAATATTGCAACAGATTCAAACTTACATAGTGTAACCTCAATAAAAACACCCGTCCAACCTCTTAGCGAAGGATTCTTACCTCAAAATTTCTTGACATCAGAGGCAAACTTTCAGACACCTCAATCTTTGCCTCCTGCACCGCCACATGAACAGCACCCAATGCACATTCCTAATGACAGCTTGACTAATGCATTTTCCGAACAGCATTTTAAAGAAAATGCCATGCGGCCAATGTCTGGCTACCCTTCCCAACTACCATCTCATATGCTTTATCCCCCGAGACCTCATTTTTCTGGCAGTTTGCTGCCTAATAATGGACTGCAGCAGTCAAACCTTCCACTGTATGATCTACATCTCCCGCCACCTCAAAATATGATTACGTTGCTAAGGAGACCCCCCTTCCCTTCTTCAGAATCCTTTCAGTTGCCTCATCAGCAAAATGCAATGCCACTGAGGAATGACTTCATACCTGCTGTCAGGCCCTATCTTAGTGGAGAGATTCCTGGTTCACGACCGTCTGATTTGTTTTGCCAGCCTTTCCCCTCATCGTCACCTGGTTATCCTCCTCGGCATCGATCTGCTGGAATCGAACAAGGTGGTTTTCATTTACCAAACCAAGGGCTTACCCCCTCTGGTTCTGTGCCTTTGCCAAGGTCCTTGCAAGGAGAAGAAATTTCTATGCCACACATAAGAAATATACATCATGCTCTTCAGCCACCACTGTATAACCGACAAAACCCTTTACCTGCTAATTTATCCTCAAGTTTTGACGCAACAGGGTCTATGCATCCTTCTATACGAAGATACACAGAGAGCAGCTTCCAGCCACCACTCTCTGATGCCGGTTTACTTAGATTTCCTATCAGAGAGTATTTCAACCCATATGCCTCCACTTTTGAACAGCCATTAAGAGGCCCTGACATTCTTGGCACAGAGATCAGAAGAATTGATTCTGCTCCCAATGCAGATATTGTTGGTTTTGAATTTGGGATGAGAGCATCATCTCCAGGCACCTCAAAACGATCGAATGAGCAAATTCTGCCAAAAACTGGGAGTTTTGCACATGAAGCCTCTGCAGAGGTGGTGCCTAATTCACAAAGGCAGCTGGCTCAGGCGCCAGCATCTGGTATCCCATATGATCCTCTCTTTGATAGCATCGAACCTTCTTCTGACACGTCCAAGATGCGTGCTGAGGAGCAAAACTCAGGTATTAATGACACAGGCAGTGCATCGAAATTGAACTCACGTAGACCTAAGGTGGGAAGCAAGAAACGTAGAGGGGCATCAGCTGCTGAGGTGAAGGTAGAAGTTGACGAATTGGGTGAAGTTGCAACAGATGCAGATGCAGGCGGTGTTGAGAATGAAAGTCCTCAGCTGCTTGATAAAGACTGGAGCCCCCCAAATCCGTTTGATGTTGGTGATGCGAATGTTGGTGAGATTGAGATCACTCAGGTCAGGTCGCCCGGCAAAAGTAAAAAAAGCAGGGATTCAAGGTCAATGAGGCTTTTCAAGGTTGCCATTGCAGATTTTGCAAAGGAGGTTCTCAAGCCGTCATGGCGTCAGGGGAATCTTAGCAAAGAGGCATTTAAGACCATCGTGAAGAAAACGGTGGATAAGGTTGCTGGAGCAGTGCCGAGCCATCAGTTACCCAAGTCACAAGCAAAGATCAATCATTATATGGAGTCTTCACAACGCAAACTGACTAAGCTGGTGATGGGCTATGTTGATAAATATGTCAAGATGTAAACTATGCCAACGCCCTAAATTGGTCGACATCGATCCTTTTTAACCATCCCTTTAAACTCGCTTCTGAAGTTTGTTGGCGGCTGCTTTTTTACAGTTGGTATTTGGAAATTGAAGTATGCATGTATATGTTATGATGACCTATCTCTTAGTGCTGCAGTTGCTCTTTTTGACTGATTTGATGAATTATCACCTCCAACACACTTTATTGTATGATATCATCTGTTTTTCATGGGAAGCAAGTATTTCTTTTGCATTTTTCCCCAGTTTTTAATTTTAAAAATCTCTTAATTAGATAGAAAATACTGCAGTACCACCCTTATTCATTCTTAGTTAATTCTCCCCTCTTTATTTACATTCTGGATATTTTTTTCGTTCAAACGTTAGGTTATTACTGTTGAACCCAGCACTCTGGCTGCTGGTGGGTACACATGGTTGAGCGGGCTGACTTCAGAAACAAGCGCTTTAGGCGCTAGGTGTGCTGTCCCTGGCACCCGTTTGGCCGGGGGTTGGGCTCCTGGGTGCGCCTTGGTGCCCACAAATGTTCTTGCATGCTGCTAGGTGCATCCAAGCTTCAGGAATGTTTTTAGTTGTCAGTTAGCCCATGAGTTGGGCGCTCTGGCATTCCCAAGTGCCTAAGCACATGAATTGGTTTAGGGCAACATCTTTGGACCATATGTGCTATTAAAAGGCTATTGAAGGTAAATAAAGAAACCCTAAGTGTGGAATGAGAAGAATAGCTATTGCTTGAAAATTTTCATTACTCTGATGAAGCACAAGGTGTGATGTTGACCTTAGGTTTGTGGAGACTGGTTTTTTTTGGCGTTTAGCTGTTGTTCTGTGTAAGCTCTCATCTCTCCTTGAAATTGGGTTTTTCATTGCAGTAGAATACTTTGAATTTTTCCCATTAAAGAAGTTTGATTACTGTATATGTGTCGGTTCGTGGAAAGGATTCCAGTGTTTCAAAATCTTGTTGAACTCTTTGTGATTATATATTCTATAATGAATAGATTTGTGCG

Network for GWHGAAEX008197

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01805.19	Surp	300	350	4.10E-07

Protein Sequence

>GWHPAAEX008197
MYSGHRNYTPQFRQRPSPHPPPHLPHIPPPPYHQASPSSVPHFLQAAPGPQLPPIPQAPQFFGRLAPPLGQPVPFTHTPSVNSTLPYLQPLPPPPPPLPPPPPPPQVNGSAPAVHSYSLASRPISLPLPPPPPRMLQPALQHNAQPQGQMSYHSLQPSYSTHPPPWPTNLPNPPPTPPNFEMTVPISFPGQNRAADAHPPAVPPLPPPPPPPPPSSPPPLPPSPPAPIPASDSFSSDALKVLASDSKVDSEALVVDNTSVYLVDASKGFKEGKEIVVDLEASENLSLPPPRPDETIIRSIEVLCQFIVKVGPDFENTARAKEAGNPQFAFLFGGEPGSAAAIGHEYFQWMKRKYVFEAEFHKGLKGIALPASTMTTGVSSQSGNLHCVDLAHSPATSDIDMEDDITPADISKGFNIKNEDSTISTHVCSYAHENVKEQIHSEIYVGIGASSPIVPVMDAEDEKEFSVFEDVSPERGSPDTADPDGITYSSSRFPTGDAIKGKVLLNTEDKPQEATGVFLKYGSPFRLIQDYASDESDENVKSGDAEDFHPVSPPATTVVISRLKQEKPSELCSNFDAQDFTTAGNESVYKTTSGQHFPSTPQEVPTSTENTIMLTRLSKLSSGQHSPSMLLEKILSQEKTVLSISLNECNTMSRNNDADIHQAEKLSEDGRKTLGPTSEYDDLDEKKLDVDKKTEFFSGSVMEQQVSLDVDEFGRLIRKGASGSESDGSHYTEKHGKRGRSQNRSLSRSPHGSRKRYRSRSARRRDKRSHSHSWSPKRRSKSPSSFRKNIPARRIRDQPPECFNFNRGRCFYGASCRFLHRDFAQHIHSQQRHQDSRKSRYFDGSDDTSLSRINRRDNTGVEAHIEKNNKFVEPRNHVKHVYQGQSDSKTRTVSGQISEGKDEQAPASETKANADQVSQEMISMELEPSGGKGPVKPTLNFVEEESTQLLLDSSEPQQADIFQLFSSDGKDSSFSEFPSSADAVSLQPSLSTTANAIEAKKCSQHTLDQVSSVLPLLSVQTNYSANDPIQALNSINVDQSNATEATSNQNIATDSNLHSVTSIKTPVQPLSEGFLPQNFLTSEANFQTPQSLPPAPPHEQHPMHIPNDSLTNAFSEQHFKENAMRPMSGYPSQLPSHMLYPPRPHFSGSLLPNNGLQQSNLPLYDLHLPPPQNMITLLRRPPFPSSESFQLPHQQNAMPLRNDFIPAVRPYLSGEIPGSRPSDLFCQPFPSSSPGYPPRHRSAGIEQGGFHLPNQGLTPSGSVPLPRSLQGEEISMPHIRNIHHALQPPLYNRQNPLPANLSSSFDATGSMHPSIRRYTESSFQPPLSDAGLLRFPIREYFNPYASTFEQPLRGPDILGTEIRRIDSAPNADIVGFEFGMRASSPGTSKRSNEQILPKTGSFAHEASAEVVPNSQRQLAQAPASGIPYDPLFDSIEPSSDTSKMRAEEQNSGINDTGSASKLNSRRPKVGSKKRRGASAAEVKVEVDELGEVATDADAGGVENESPQLLDKDWSPPNPFDVGDANVGEIEITQVRSPGKSKKSRDSRSMRLFKVAIADFAKEVLKPSWRQGNLSKEAFKTIVKKTVDKVAGAVPSHQLPKSQAKINHYMESSQRKLTKLVMGYVDKYVKM

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0046872	Molecular Function	metal ion binding
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.290
SRP064423	SRR2545915	Juvenile tuber	49.180
SRP108465	SRR5643513	five period of Gastrodia elata	29.980
	SRR5643514	five period of Gastrodia elata	31.600
	SRR5643515	five period of Gastrodia elata	30.810
	SRR5643524	five period of Gastrodia elata	31.250
	SRR5643525	five period of Gastrodia elata	31.680
	SRR5643528	five period of Gastrodia elata	26.340
	SRR5643658	five period of Gastrodia elata	35.000
	SRR5643659	five period of Gastrodia elata	42.750
	SRR5643660	five period of Gastrodia elata	43.740
	SRR5643661	five period of Gastrodia elata	40.330
	SRR5643662	five period of Gastrodia elata	31.610
	SRR5643663	five period of Gastrodia elata	49.210
	SRR5643664	five period of Gastrodia elata	40.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.900
SRP279888	Gastro	Gastrodia elata tuber	34.17
	Juven	Juvenile tuber	37.83
	Mother_Gastro	Mother tuber of Gastrodia elata	23.58
	Mother_Juven	Mother tuber of Juvenile	27.50