Gene detail

Detail information of GWHGAAEX008200/evm.TU.scaffold_21.265

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2389	1.00E-69	Predicted bromodomain transcription factor
nr	gi\|672125203\|ref\|XP_008786015.1\|	5.55E-160	PREDICTED: transcription initiation factor TFIID subunit 8 [Phoenix dactylifera]
Swissprot	tr\|Q9SYZ9\|TAF8_ARATH	4.00E-70	Transcription initiation factor TFIID subunit 8
trEMBL	tr\|F6HR51\|F6HR51_VITVI	1.00E-124	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57100.1}
TAIR	AT4G34340	1.00E-69	TBP-associated factor 8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000022	7689869	7719138	-

Transcript Sequence
>GWHTAAEX008200 TTTTTTTTGGCCACGTAGGATGGCCGGAATGAGGTCTGACTGCCGCTCAATCGCCATTTTCAATAATCGGCACATTTATTCGCACCTCTATAAATACACAGCCCCAGTCATCCCCCTCGATCACTTCAAGTCTTCGCCTCTCCTCATCTGATCTGCGTGTTTCTATACCGTTAGGGTTTTTGGACCAATTTTTGAATCCCCGCCGAGCCCTACCGCATGCCAACTGATTTGATTATTTCAAGCTTAGTTTACTCCGCATCCAAGAAACCCTATTTGCTTCTGAACCGCTGCTCAATCACGAGGCTTCTCATTTGTTCTCATTTAAGCTGGAGAGTTCTCTGATTTGTGGAGTAGCCGGCTAGCGACCTCGACGAAAGTCACGGGTAGGCACGAAATCAGCTCTCCGCCGTTTCTAGGAATCTACTTCAGCGCGTGGTATCAATGCAATTTAAATCTAGGGTTTTCATTTTCCACATTTGGATGGGATCCTAATTCCAGATCCGGTCAGTTTTCTAGCTCCCAAGGTATTTCTCCACCAGTCTTGGAACAATTTCTGGTTATAGACTGATGATAATTTGAACATGAGCGATGGGGGAAAGCTTATCGGGGCAGACAATGAAAGCAGCCCTTCAAAGAAGAGGAAGCAGAATGGCAGCGATGAGTTTGGCCGTGCTGTTTCACGGATTGCAGTTGCCCAAATTTGTGATTCGACTGGGTTCCATAGTTCACAGCGGTCCGCACTGGATGCTCTTGCGGATGTAACCATTAGGTATATCTGCAGTTTAGGTAAAACAGCGCATCACTATGCTAACATATCTGGTAGGACAGAGTGCAATGCATTTGATGTAATACAAGGGTTGGAAGATCTAGTTGGTTCAACACAGGGATTTGCTGGTGCTTCAGATGACAACAGGTGTTTGGTTAGTTCTGGAGCAGCTCGAGATATTTGCCAGTTTGTGAGCACTGCAGAGGAGGTTTCTTTTCCACGCTCAATTCCAAGGTTCCCAATTGTTCGTTCATTGAAGCCTACACCTAGTTTTTCTCAGAAAGGATATACCTCTACAGGGAAGCATATCCCTGAATGGCTGCCAGCATTTCCTGACCCTCATACCTACATTCACACCCCAGTTTGGAATGAGAAAACCACTGATAGCAGGGTGGACAAACTTGAGCAAGCAAGGCAAAGAAGGAAGGCAGAGAGTTCACTGCTGAGTTTGCAACAGCGATTATCTTACTACGATGCAACCGGGCCTGTTCATTTGAATTACGCCAATGATGCCAAAGGGAAGCGGCCTGCACAGAATAACCCATATTTTGGACCTTCTTTGCCTTATGACTCAAAGCAAGCACCAAGTGTTGCTATACCAAAGCATGATACCACAAGGAAGAAGTTGTCAGTACTTGAGACTTTTGCACCTGCTATTGAAGCTGCTAAGGCCGGTGCATTGGAATGCAGAGCTATTGAAAGAGTGTCACTGCTTAGCAAAAGGGCGCCTGTGCATTTTAGGATAGGTGTTGATAAGAAATCCATATCAGTGCCATTGCCTTCAGGCACTTTAGGCAGCAGATCGGATTCCTTGTTTTTAAGGGATGATCAGAAAGATGATAAGAAGCGAAGAGCTGAGATGATACTTAAAGAAGCGATGGAGAACCCACAGGAGCTCATTCAGCTGTAGTTTAAAATATAGTTTGTTTGTTGGGTTTCTTCTTATCTGCAGATGAACACAACTTTCTGTGCTTCCCCAGTGAATCATTTCTTTAGGAAAGTTGAGCTCTTCAGGCTTTCTAATGCTGACGAAAGAAACATCTAGCTTTCTGGATTGCATAACTTTTGTTTATGATTGGGAGCTTCAAAACCTTTTCAACTAATCTATCTGCCTACTGTGAACTGTTTTTCAATTGAGAATTTGGAAGGCTGCTGCAATAATATGGCTTTTCATCACGATTTCTTTCATGCATTAGTATTTCCTTCTCATTGATGGATTCATAGCATTGAATATTAATGTATGCGGGTGAATTTAATGGTTCCAAGCCCATAAGCTGTACAATAATGCTGGGTCTTATTTCAATACTATCCAAATTCCTGAAGTTGATTTGAGGTTGCTGGAATTCTCCTGTCAGCATTCTTATTTAATTTCTTCATAAAACAGATGAATTCAGGAATTCTTACATTGTGCCTTGGTGAACCTTCCTTAAGTTTGGGCAGCATTTCTGATGATAATTCATCAAGATTATTATATACTCCTGATTGAGTCATGTGTCTTGAGGAGCATCTTTTGCCATCGTCATCCTTTATTGAAGGGCACCTCCTGATGTCTCTGTAAATGGACTCCTTGACAATGTCTGAAGGCATGAGATGCTTTTGGCGACCTTCCTGAGAAAAATGAGCGGTTTTGTGTAGAATATATCAGATCTGGTGCTGAGCGTGCTCAAGTGAAGGAATTGATGAGTATGATGATGAGGTGGAGAGTTTTGACAACTCCACGGAAGAGGATTTTTTATCATCCTGAGAACTCCTGCTCTGATGTTTCTCCTGTAAATATGCAAGATCTTTATCATTTATGATATGGTTGTGTCATGTTCATACCAGATTGCACGATGAGCTGGAGTCTTGATTGCTGGGGTCTGTTGGGGCATGAGCTGCTGCACATTGTTTCATCACTACTGTATTTGGGAACATGAAGCTAAAAGAAAATTCCATGTTGCAGGTGCACAAGAAAATTGTGGCAACTCCATCAAGCACAACATGCAAAGGAGGAATCAAGGACGCTCCATCTTGATAAAGCTTTGCGAATGAGGAAAAATTTTATAGCTCTATCGCCAAAGTGTGTGAAGAAGAAATCTTAGCCCCTTCACCAAATAAAAGTTTTGAGAAGAAGGGAATTTCAGAGTTCCATGATCAAATCATTCAAATGAGGGATTATGCGAGCATTTCTTTGCAAGCTATGGGATAGCAAAATATAAAAGTATTTTTGAGTAGAATCTCAGATGATGAACCTTTGAAAAGTAGACGTAGTCTGTGACGAATCTGAACTACTATAAATTTGTGTTTTTCTTTACTCTATTTTTAGTTCTTAGTTTTATTTTTTGCCTTCACTTTTGAGATTTTTCAATAAAATTAATTAAATATTTC

Network for GWHGAAEX008200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07524.12	Bromo_TP	27	96	5.00E-20
PF10406.8	TAF8_C	164	212	1.50E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14649	TAF8	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0046982	Molecular Function	protein heterodimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.200
SRP064423	SRR2545915	Juvenile tuber	9.050
SRP108465	SRR5643513	five period of Gastrodia elata	5.970
	SRR5643514	five period of Gastrodia elata	5.200
	SRR5643515	five period of Gastrodia elata	6.640
	SRR5643524	five period of Gastrodia elata	5.660
	SRR5643525	five period of Gastrodia elata	6.990
	SRR5643528	five period of Gastrodia elata	5.820
	SRR5643658	five period of Gastrodia elata	5.930
	SRR5643659	five period of Gastrodia elata	9.170
	SRR5643660	five period of Gastrodia elata	8.700
	SRR5643661	five period of Gastrodia elata	9.350
	SRR5643662	five period of Gastrodia elata	10.270
	SRR5643663	five period of Gastrodia elata	9.300
	SRR5643664	five period of Gastrodia elata	9.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.990
SRP279888	Gastro	Gastrodia elata tuber	7.24
	Juven	Juvenile tuber	5.16
	Mother_Gastro	Mother tuber of Gastrodia elata	8.70
	Mother_Juven	Mother tuber of Juvenile	6.64