Detail information of GWHGAAEX008204/evm.TU.scaffold_210.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-16 | FOG: PPR repeat |
| nr | gi|727543077|ref|XP_010444871.1| | 6.02E-16 | PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Camelina sativa] |
| Swissprot | tr|Q9SZL5|PP356_ARATH | 1.00E-16 | Pentatricopeptide repeat-containing protein At4g38150 |
| trEMBL | tr|A0A067FYZ4|A0A067FYZ4_CITSI | 3.00E-16 | Uncharacterized protein {ECO:0000313|EMBL:KDO68436.1} |
| TAIR | AT4G38150 | 4.00E-16 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000223 | 164904 | 167217 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008204
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 111 | 137 | 7.50E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-M-type |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.790 |
| SRR2545915 | Juvenile tuber | 0.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.400 |
| SRR5643514 | five period of Gastrodia elata | 0.390 | |
| SRR5643515 | five period of Gastrodia elata | 1.300 | |
| SRR5643524 | five period of Gastrodia elata | 0.570 | |
| SRR5643525 | five period of Gastrodia elata | 1.090 | |
| SRR5643528 | five period of Gastrodia elata | 1.060 | |
| SRR5643658 | five period of Gastrodia elata | 0.800 | |
| SRR5643659 | five period of Gastrodia elata | 0.850 | |
| SRR5643660 | five period of Gastrodia elata | 0.470 | |
| SRR5643661 | five period of Gastrodia elata | 0.160 | |
| SRR5643662 | five period of Gastrodia elata | 0.780 | |
| SRR5643663 | five period of Gastrodia elata | 0.950 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.78 |
| Juven | Juvenile tuber | 0.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.22 | |
| Mother_Juven | Mother tuber of Juvenile | 1.37 |