Detail information of GWHGAAEX008208/evm.TU.scaffold_210.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743796167|ref|XP_010924663.1|3.43E-103PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Elaeis guineensis]
Swissprottr|Q9XI47|SHH1_ARATH1.00E-58Protein SAWADEE HOMEODOMAIN HOMOLOG 1
trEMBLtr|D7STG8|D7STG8_VITVI5.00E-84Putative uncharacterized protein {ECO:0000313|EMBL:CBI20567.3}
TAIRAT3G183806.00E-56sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000223460153504885+
Transcript Sequence

Network for GWHGAAEX008208

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16719.4SAWADEE1212481.20E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003682Molecular Functionchromatin binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms40.780
SRR2545915Juvenile tuber34.040
SRP108465SRR5643513five period of Gastrodia elata19.980
SRR5643514five period of Gastrodia elata17.440
SRR5643515five period of Gastrodia elata18.400
SRR5643524five period of Gastrodia elata14.970
SRR5643525five period of Gastrodia elata22.880
SRR5643528five period of Gastrodia elata23.310
SRR5643658five period of Gastrodia elata25.690
SRR5643659five period of Gastrodia elata13.740
SRR5643660five period of Gastrodia elata14.650
SRR5643661five period of Gastrodia elata14.100
SRR5643662five period of Gastrodia elata14.810
SRR5643663five period of Gastrodia elata16.760
SRR5643664five period of Gastrodia elata17.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.120
SRR6049655Rhizomagastrodiae_C368-T10_good_116.380
SRR6049656Rhizomagastrodiae_C368-T07_good_116.580
SRR6049657Rhizomagastrodiae_C368-T07_good_121.180
SRR6049658Rhizomagastrodiae_C368-T04_good_117.120
SRR6049659Rhizomagastrodiae_C368-T04_good_118.120
SRR6049660Rhizomagastrodiae_C368-T01_good_118.560
SRR6049661Rhizomagastrodiae_C368-T04_good_114.190
SRR6049662Rhizomagastrodiae_C368-T01_good_115.850
SRR6049663Rhizomagastrodiae_C368-T01_good_115.580
SRR6049664Rhizomagastrodiae_C368-T10_good_117.070
SRR6049665Rhizomagastrodiae_C368-T10_good_117.070
SRP279888GastroGastrodia elata tuber 21.54
JuvenJuvenile tuber33.04
Mother_GastroMother tuber of Gastrodia elata 26.90
Mother_JuvenMother tuber of Juvenile 36.52