Detail information of GWHGAAEX008210/evm.TU.scaffold_211.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332666557|ref|YP_004449345.1| | 5.00E-128 | beta-galactosidase [Haliscomenobacter hydrossis DSM 1100] |
| KOG | KOG0626 | 0 | Beta-glucosidase, lactase phlorizinhydrolase, and related proteins |
| nr | gi|297746386|emb|CBI16442.3| | 0 | unnamed protein product [Vitis vinifera] |
| Swissprot | tr|Q42707|F26G_CHESP | 0 | Furostanol glycoside 26-O-beta-glucosidase {ECO:0000303|PubMed:8766714} (Precursor) |
| trEMBL | tr|F6GUD2|F6GUD2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB43753.1} |
| TAIR | HS4504967 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000205 | 32542 | 52095 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008210
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00232.17 | Glyco_hydro_1 | 72 | 542 | 1.70E-161 |
| PF00232.17 | Glyco_hydro_1 | 622 | 1092 | 1.60E-161 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01229 | LCT | Metabolic pathways | map01100 |
| Galactose metabolism | map00052 | ||
| Carbohydrate digestion and absorption | map04973 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.460 |
| SRR2545915 | Juvenile tuber | 7.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 1.640 | |
| SRR5643515 | five period of Gastrodia elata | 0.020 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.070 | |
| SRR5643658 | five period of Gastrodia elata | 0.020 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.020 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.020 | |
| SRR5643664 | five period of Gastrodia elata | 0.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.22 |
| Juven | Juvenile tuber | 0.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |