Gene detail

Detail information of GWHGAAEX008212/evm.TU.scaffold_211.3

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1815	Predicted E3 ubiquitin ligase
nr	gi\|743765162\|ref\|XP_010912800.1\|	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q84RR0\|ARI7_ARATH	Probable E3 ubiquitin-protein ligase ARI7
trEMBL	tr\|M0TUJ0\|M0TUJ0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P28870_001}
TAIR	AT1G65430	IBR domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000205	287558	324633	-

Transcript Sequence
>GWHTAAEX008212 TTTTTTTTTATTGGAAGAATTGCATCCTGCACTTTTTGCTTAGTCAATCTCATTCTAATTTCATGCTGCGGGCTTCGGCCGGACCCCCACAGCACTCGTTGATTTCAGTCTGATAGGATTCCTGGGGCTCCTAGGGTTTCGGGTTTTATCTGCGGCGTCTAGGGTTCGTTATTGGCGAATGATGGATTCTGAGGACGACATGCATGACGCATATGACGTGGAATCGCTCGACGAGGATTTCTACAGCGGAGGGACGCCGATTGGTAGCGAAGACGGCGACGTGGATTACGATTTCGTGGACAACGAGTCGGAGGACTCTGAGGACATAACATCGTATCGCCAGCAGCAGAATTATACAATATTAAATATTGCTGATATACGCCAGCGCCAAGATGAAGATATAAGTAGAGTCTCTACTGTTCTTTCAATATCTAGAGTGACAGCCTGTGTTCTTCTCCGTCATTATAAGTGGAGTGTCAGTAAGGTGCATGATGAATGGTTTGCTGATGAAGAAAATGTTCGGAAAGCTGTTGGCTTGTTGGAAAAGCCAGTGGGAATGCTTAACACTAGAGAATTAACTTGTGGAATCTGCTTCGAAAGCTATCGACGGGATGAAATGTCGGCTGCAGCCTGTGGTCATCCTTTTTGTGGTGCCTGCTGGAGAGGCTATATTGGAACATCCATAACTGATGGCCCTGGATGCTTAATGCTCCGGTGTCCTGATCCATCTTGTGGTGCTGCTGTTGGGGAAGACATGATTAATATGCTGACCTCTTGTGATGACAAGGAAAAGTATTTACGTTATCTGTTAAGGTCTTATGTTGAAGATAATAGAAAGACAAAATGGTGCCCAGCTCCAGGGTGTGAATTTGCTGTGGAGTTTGTGTTGGGCAGTGGCAGCTATGATGTTACCTGTAATTGCTCGTACAGTTTTTGTTGGAATTGTACTGAGGAAGCTCATCGACCAGTAGACTGTGCCACTGTTGCTAAGTGGATTCTGAAAAACTGTGCAGAATCAGAGAATATGAATTGGATTTTGGCCAACTCAAAGCCTTGTCCAAAGTGCAAAAGACCGATCGAGAAAAACCAGGGATGCATGCATATTACATGCACCCCCCCTTGTAAATTTGAATTTTGTTGGTTATGCCTTGGTACATGGTCGGAGCATGGGGAAAGAACTGGGGGTTTTTATGCATGTAATCGCTATGAAGCAGCAAAACAGGAGGGAGCATACGATGAGTCTGAAAGAAGGAGAGAAATGGCTAAAAATTCTCTGGAAAGATACACTCATTACTATGAAAGATGGGCTACTAATCAATCTTCTCGACAAAAGGCACTCGCAGATCTACATAGCATGCAAATGGAAAAGCTTGAGAAATTGAGTGATAGGCAAAGCCAGCCAGAGTCACAGCTCAAGTTTATAATTGAGGCTTGGTTACAGATTGTGGAATGCCGGAGAGTATTGAAATGGACTTATGCCTATGGGTATTACCTCCCTGAGCATGAGCATGCCAAGCGGCAGTTTTTCGAGTATTTGCAAGGTGAGGCAGAAGCTGGATTGGAGCGGCTTCATCAGTGTGCCGAGAAGGAACTCCAAGTTTATCTAGAAGCAGAAGCCCCCATGAAGGACTTCAATGATTTCCGTACCAAACTTGCCGGCCTTACTAGTGTGACTCGGAACTACTTTGAGAACCTTGTTCGGGCTCTAGAGACTGGGCTGAAGGATGTGGGCCCCACCTCTAGTAATAATCAGGCAACCTGCAGCAAGAGTTCAAGCTCCAAGAATATGGCAGGGGGTGGCAAGGGGAGCAAGCTGGGAAAGGGTAAGGCAACTGGGGCAAGCTCCAAGTCAGGGGGCCGTTCTTTTGATGATGGAAACAGTCTTTGGTCCTGTGAGCACTGCACCTATGCTAACCCAAAGTGTGCCACCATTTGCCAGATGTGCGAGCAGCAGCGGCTGTAGGCTCGGCGGCCTTGTGGGGGGTGTAGGAAGGGGGGCCAATCATTACTTTTTCCCCTTCTTACATAATATGACCCCCACTTTGTTGTTGTTGTTGTAGTTGTCCTGTTGTAAAGAAAACTTCCATTCGCCTCCCATTTCTTTGTGCTGTGTTCCCAGTATGTCTGCTTTCCCTTGCGGCTAATTTCTTTCCATTGCTCTCTATATTTGTTTGATTACTGTCCCTGCTGTGAGGAGAGTAGGTGAAGCCATTTTAGGAAAGGGAGGAGACTCTTCATCATGTATTATATGTTATCCATCCATAAATATATATTGACCACTTTCATTCCTTGTACATAAATATTTATACGGCTTACTGGTTTGGTTGTGCCTTGTTTCCATTTGAAGGGTGGGTTTGGTTTGTTGCATGGCTACTCTTCTGTTATAAACATGTTCGCTCTGACCTGTTCTCCTTGTAGGTGTTAAGAGTGCATTCTTTAAAGATTTAGAAGCGCCTTGCAGAGGAGATTTAACTTCAGAGTTCAGGATTCTATCATGAACCTTCCAAATTTTCTATTACTTTTTCCAAAGTTGGGATTCCCTGTTTCTTGCTTGTAATTAAATGACTGTCTTTAATTTAAATAAAAGGTGGTATGTGGTGATTTAAATTCAGAGTAGATAGTGATTATTAGGCAAAATAGATCATACAAAAAGTTGGTCTTCTCTAATTTCTAAGAAAAATGGGTGATATGAATGATTTTGAGTTTATATCAGAGGA

Network for GWHGAAEX008212

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01485.20	IBR	204	266	1.80E-16
PF01485.20	IBR	283	330	3.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.140
SRP064423	SRR2545915	Juvenile tuber	25.370
SRP108465	SRR5643513	five period of Gastrodia elata	32.670
	SRR5643514	five period of Gastrodia elata	34.900
	SRR5643515	five period of Gastrodia elata	29.550
	SRR5643524	five period of Gastrodia elata	33.660
	SRR5643525	five period of Gastrodia elata	51.960
	SRR5643528	five period of Gastrodia elata	54.280
	SRR5643658	five period of Gastrodia elata	56.820
	SRR5643659	five period of Gastrodia elata	26.160
	SRR5643660	five period of Gastrodia elata	27.000
	SRR5643661	five period of Gastrodia elata	27.760
	SRR5643662	five period of Gastrodia elata	30.150
	SRR5643663	five period of Gastrodia elata	31.510
	SRR5643664	five period of Gastrodia elata	31.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.130
SRP279888	Gastro	Gastrodia elata tuber	36.78
	Juven	Juvenile tuber	39.42
	Mother_Gastro	Mother tuber of Gastrodia elata	64.96
	Mother_Juven	Mother tuber of Juvenile	44.33