Gene detail

Detail information of GWHGAAEX008223/evm.TU.scaffold_212.2

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	1.00E-19	FOG: Predicted E3 ubiquitin ligase
nr	gi\|743831115\|ref\|XP_010934592.1\|	2.94E-24	PREDICTED: RING-H2 finger protein ATL79-like [Elaeis guineensis]
Swissprot	tr\|Q9SG96\|ATL72_ARATH	4.00E-20	RING-H2 finger protein ATL72
trEMBL	tr\|A0A059A953\|A0A059A953_EUCGR	5.00E-23	Uncharacterized protein {ECO:0000313\|EMBL:KCW50353.1}
TAIR	AT3G10910	1.00E-19	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000212	11213	13327	-

Transcript Sequence
>GWHTAAEX008223 GGCTATGGGGCTTGCCCTCGTCCTTCCCACTTTCTGTCTCTCTCTTCCTTTCCCCCCAAAACACTATATCGCATTACTTCATCCGCAATGCTCCCTTACCGGAAATCCTTAAGAGGCCCGCCGGAGGCCTCTCCGCCGTCGGATTGGGCTCCTTTCAACGGCCCGGGAGACTTCAGCAAGAACATGGGCATCGTCCTCGCAGCCCTGATCGTGGCCCTCGCCCTCGCCCTCTCCTCAGGAGCCCTAATCCGTCGGTATCTCATTTTCCTTCGCCGGCGCCACCTTGCCGCGAAGCCAATCTGCGATAAGGTGGCGCCGCAGTTGCCGGAATACCTTCCGGCAGTGAGATTCTCCGCCGGAGAGGGGATTCCGGTGGCTGAGTGCGCCATCTGTCTCGTCGAGCTCGCCGACGGGGACTCCGTCCGCGTGATGCCTCACTGCCGCCATCAGTTCCACGCCAGGTGCATAGACGCGTGGATCTCCATTCCTGGACGCCGATCCTGCCCTAATTGCCGGAAAAGCTGTCTCCCGTCGTCGCCGCCGGCAGACGGTTAGGATTCCGGTCGTTGCTTTCACGTGCTATCGTTTCATCTAGATACCAAGGCATGGCGCTCTGATTTCTTATTTAAAAAAACGAGAGAATATGAATGTGAATTATGGTATGGTGTGGTTTAGTTCTTAAATGTAATAGTTCAAACCATCACTCTGTCATTTAAAACGCAGCTTCTTTAAAAACCAATGCGATATTTTGCTCCAAAGTCTAGGATCTAACAAGCATCATCGATATACTTGTTGTGGGAAGGGATACATTTGAGTCCATCTTATCATATCTTTTTTGAGTGATATGAGCTATTGCCTCTGTGGAATCCAGTGTTATTCTTTAACTTGGGATATTATCTCTTTCAATGGCCAGTCTCTTAAATAGAAAGCCCGATACTTCGGCCTCCTCCCGCCCTGATTGCCAACATTTTTGATGCTCTGCTTCCTTCAAATCTTCTTTTCCTTTGAAATTCCACATTAGAATGTGAGCGCTTTTGCCATCCTGTCTTAGTGTACTCTTTATTGATTCGACGGAGCTCGCGATTTGGACGTTCTATTGTCTCACATCTCCATAGTACAAAGCCTCACTCCCTTGGATGGCGTCACGGTTAAATTTTTATCAATGAAATTGAGTGCTCATAAATGAAAATACAGATTTGGGTCTGAAATATATACAACCTTCTTTTTTTGTGGGGTTGATTCTCTACCCTCTTTTTTAAATATTTGTTCTTCAGCGTCTGTCATACCTTCACTGCCGAAGACGCTGTCATCACGGTGTATCTGATGTCTTATGTGAGGCTTGCGGATTAACCTACATGCACTTCGATTCTACCCGATCATTCTCGGACATCTCATCGAGCTTCCATTACCTTCAAGAACATATCCAAGATGTATGGCACACCACTTCCCAAAGCTATTATTCTGGTCAAAACATCGATCTTTATCGAATGTGTAGCGATATGATGCACAAATTTCTCAACTAATGTTGATATAAACGAAATTTCTCCTCATTCCGCCATGCTACAACCGATCGAACATCTATCCCCCTTTGAGGAACACAAATCACAAACTCAAATTCACAAACATAATACAAAACACAAGATTTACATTGTTCGATGAGATTCACTTGCCTCCACAAATAGGATAGAAGAAGAAATATTACTAAATTGAATAGGAGAAAAAAATTTACAAGCAACAAAAGTTTCTAACAACATTTCAATACATACCTATGCAAATTCAAAACAATTACAACCCCAAAAGAAGAAAAATTACAGTTAAAAACATATTAGAAAACCTTAAAATATGTTATGAATACAATAAAGTTTCAGAATTGCACAAAACTGTCTCTACAGAGCAAATTTTATGAAACCACAATGAAAACAAGTGATGTAAAGCCTGCCTGGTGCTTGAAAATGTCCAATCCTCGGCTAATACTATTTACTCGGTAAAGCCTGCCTGGTGCTTTAATCTGTAATTTCAAACTCATTCCTATTTGATCCAATCATTTTCAGCATATTTAAATAAGTAACTTTATCAAATTATCATAGAACATTGCTCGTATATGTAATGTTATTC

Network for GWHGAAEX008223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	98	143	5.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.980
SRP064423	SRR2545915	Juvenile tuber	5.920
SRP108465	SRR5643513	five period of Gastrodia elata	5.960
	SRR5643514	five period of Gastrodia elata	7.450
	SRR5643515	five period of Gastrodia elata	5.140
	SRR5643524	five period of Gastrodia elata	5.190
	SRR5643525	five period of Gastrodia elata	12.360
	SRR5643528	five period of Gastrodia elata	9.330
	SRR5643658	five period of Gastrodia elata	12.800
	SRR5643659	five period of Gastrodia elata	6.700
	SRR5643660	five period of Gastrodia elata	5.300
	SRR5643661	five period of Gastrodia elata	5.410
	SRR5643662	five period of Gastrodia elata	5.720
	SRR5643663	five period of Gastrodia elata	6.030
	SRR5643664	five period of Gastrodia elata	6.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	62.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.420
SRP279888	Gastro	Gastrodia elata tuber	18.70
	Juven	Juvenile tuber	4.16
	Mother_Gastro	Mother tuber of Gastrodia elata	6.78
	Mother_Juven	Mother tuber of Juvenile	2.48