Detail information of GWHGAAEX008237/evm.TU.scaffold_212.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434392901|ref|YP_007127848.1| | 6.00E-37 | 16S rRNA processing protein RimM [Gloeocapsa sp. PCC 7428] |
| KOG | KOG2388 | 1.00E-136 | UDP-N-acetylglucosamine pyrophosphorylase |
| nr | gi|672152335|ref|XP_008797487.1| | 0 | PREDICTED: uncharacterized protein LOC103712681 [Phoenix dactylifera] |
| trEMBL | tr|M0TU14|M0TU14_MUSAM | 2.00E-173 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P27110_001} |
| TAIR | AT5G46420 | 1.00E-136 | 16S rRNA processing protein RimM family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000212 | 552254 | 608029 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008237
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01782.17 | RimM | 84 | 171 | 8.40E-16 |
| PF05239.15 | PRC | 178 | 274 | 2.00E-06 |
| PF01704.17 | UDPGP | 452 | 547 | 3.00E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006364 | Biological Process | rRNA processing |
| GO:0043022 | Molecular Function | ribosome binding |
| GO:0070569 | Molecular Function | uridylyltransferase activity |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.800 |
| SRR2545915 | Juvenile tuber | 8.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.880 |
| SRR5643514 | five period of Gastrodia elata | 4.800 | |
| SRR5643515 | five period of Gastrodia elata | 4.470 | |
| SRR5643524 | five period of Gastrodia elata | 3.900 | |
| SRR5643525 | five period of Gastrodia elata | 3.170 | |
| SRR5643528 | five period of Gastrodia elata | 2.950 | |
| SRR5643658 | five period of Gastrodia elata | 2.960 | |
| SRR5643659 | five period of Gastrodia elata | 3.100 | |
| SRR5643660 | five period of Gastrodia elata | 3.610 | |
| SRR5643661 | five period of Gastrodia elata | 3.690 | |
| SRR5643662 | five period of Gastrodia elata | 3.360 | |
| SRR5643663 | five period of Gastrodia elata | 3.530 | |
| SRR5643664 | five period of Gastrodia elata | 2.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.62 |
| Juven | Juvenile tuber | 5.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.49 | |
| Mother_Juven | Mother tuber of Juvenile | 3.35 |