Gene detail

Detail information of GWHGAAEX008241/evm.TU.scaffold_212.25

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521462574\|ref\|YP_008149444.1\|	1.00E-39	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
KOG	KOG0061	0	Transporter, ABC superfamily (Breast cancer resistance protein)
nr	gi\|672183402\|ref\|XP_008811977.1\|	0	PREDICTED: ABC transporter G family member 7 [Phoenix dactylifera]
Swissprot	tr\|Q9ZU35\|AB7G_ARATH	0	ABC transporter G family member 7
trEMBL	tr\|M0RJS8\|M0RJS8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P20030_001}
TAIR	AT2G01320	0	ABC-2 type transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000212	623326	666265	-

Transcript Sequence
>GWHTAAEX008241 TAGGGGAGACATTCAAACGATTATGAGAGACATTCGAACGATTATGGGAGATATTCGAACAATTCAAGCAAGCTCCAAGTTCGCCGAAGGCCTTTGACTGAAATCGCTCTTTCGTCACTCTCAAGCGAAGGTCTTCAGCTTCGAGATCGAAGACGAAGCTCCGCGTTCGCCGAAGGCCTCCGGTTGAGATCTCTTCTTCGTCACTCGCCAGCAAAGGTCTTCGGCTTCGAGATTGAAGACGAAACTCCGTGTTCCTCTGCGGTCAGAGAGACGAAGCTCCGCATTTGTCGAAGGCTTTCGACTGAGATTGCTCCGTCGTTTCTCAAGAGACTGTTCCGCGTAAAATTGGATTTATGCCGATTTAGCTAAAATAATTTTATGTGCGAGGATTTTATAGCGCACCTTTGAGCTTGCTTGAAAGCCAAAAAAATGGCTTCGAAATAGGTGTCGTATTTGCAATTATTCAACCTTAGGCATACGTTAAAAAATATGTAGTAGTTATATTACCCACATAAAGTGCTCTCCCGCGTTCCGGCTCTTACCTCTGTCTTCCTCTGGTCATCATTCTTCCATTTCTTCGGCAAGCCCTAGTTTCCTCCATTTCGATAACCAGATTTTTTTCCCACAGAGACATATGTTATTCATCGATGGGAGATCTCTCGGCCGGATTCTGGCGGCGGCGGCTGCCGTATTCTTTTTCCGAGCGATCACCGGCGCCAGCCCTGCCCTACTACCGGAGGAAGAACTTGAGGATTCCGGTGAAGAGGAGGCCCAATCGGACACAGGGAAGGTTTTACCAGTCACAATCCGGTGGAGCGGCATCACTTGTTCTCTCTCGGACAAGCGTGGGAAGACTGAAAGGTTTCTTCTTACGAATGTAAGTGGAGAGGCAAAACCTGGGAGATTGCTTGCGATAATGGGGCCATCTGGTTCTGGAAAGACTACTCTGCTCAATGTGCTTGCGGGGCAGCTTGCAGCTTCGTCAAGATTTCATATAACTGGCAATGCGGATGTCGTTGGAAAATATAGATCGAGTGGATGTTACAAGATTGCTTATGTGAGACAAGAGGACCTTTTCTTTTCACAACTAACGCCGAGGGAAACATTGTCTATTGCTGCGGAGCTCCAGTTTCCTGAGATTGATTCAATTGAGAAGAGGGATGCATATGTGAATGAGCTCTTATTCAGGCTAGGTTTGATTAATTGCGCTGATTCTATTATTGGTGATGCCAAAGTTCGTGGAATCAGTGGGGGTGAAAAGAAACGTCTATCACTTGCATGTGAGCTGATAGCCACTCCATCTATCATTTTTGCCGATGAACCAACAACTGGTCTGGATGCATTCCAAGCTGAGAAGGTTATGGAAACTCTTCAACAGCTTGCACTTGTGGGTCATACTGTGATCTGTTCAGTTCACCAGCCTAGATGCTCTGTATATAACAAATTTGATGACATAGTGTTGCTATCAGAGGGTTCAGTTGTTTATATTGGTCCTGCAAGAAATGAACCTTTGAGATACTTTGCAATGTTTGGGTACAAATGTTCAGATCATATGAACCCTGCTGAGTTCTTAGCTGATCTGATATCAGTTGATTATAGCTCATCTGACAGTGTACACACTACGCGAACAAGGATTTATAAACTTATTGCAGTGTTCTCACAGAATGCCCAAACAATTGTGTGTGAGAGTCCTGTTACGGCTAATAAAAATTTTAAGTTAACAAAAAGGTTTTCAGGAAAATCCTTCATCAAACATCAAGTTGGATGGTGCAGACAGTTCCAATTGCTTCTTAAACGAGCATGGAAACAGGCTTTTCGTGATGGGCCTACGAATATCGTCAGGGCAAGAATGTCTATTGTATCTGCAGTTATATTTGGATCTGTCTTTTGGCGAATGGGAAGATCACAAACATCAATACAAGATAGAATGGGACTTCTTCAGGTAGCTGCCATAAATACAGCAATGGCAGCACTGGCTAAAACTGTAGGTGTGTTTCCGAAGGAACGCACGATCGTCGAGCGAGAGCACGAAAAAGGGCTCTATTCTTTGGGACCTTATCTGCTTTCCAAATTGCTTGCTGAAATCCCTATAGGAGCAGCTTTTCCGTTGATGTTTGGGACGATTCTATATCCCATGGCTCATCTTCATCCTTCCTTATCCAGATTTGTGAAGTTCTGTGGGATCATCACAATGGAATCCTTTTCTGCGTCTGCAATGGGCCTCACTGTTGGTGCCATGGTTTCTACAAGCGAAGCAGCGATGGCGGTGGGGCCATCACTCATGACTGTCTTCATTGTCTTCGGTGGCTATTATGTAAACTCTGAAAATACCCCTATCATCTTCAAATGGATTCCTCGCTTTTCTCTTATAAGATGGGCATTTCAGGGTAGCTGCATCAATGAATTCAGCGGCCTCCTGTTTGAGCACAATAATTCAATCGATATTCAATATGGAGAACAGGCATTAGAAAGGCTTTCCTTTGGGGAGAGTGGGATTGGGGACACCATCACTGCCCAAGGAAAGATACTGCTCTTCTGGTATTGTGTCACTTATTTGCTCCTCAGGAACAGTAAACCAAAATACCAGCCACTTGAGCCTCCCCCTTCAGCCCTAAATTAGACCATTTCATTTATAAGTATTTTACATGTTTGACATCTAAACTCTTTACTTTTTACAATATGATCCTATCTAACAATTATCATTACCATGGAATGATTTTTTTAATGGGTGGTCTTGAAAATATTAAAGTTGGAAAGGTTAGATTTGTAAATTATAAGAATTTGAGCGGTTTTGGAAATTTCAAGGAATGATCATTATTCATGTTAGTCTATCTGAGATGATGTGAACCAGATATGGGTGATGGGTCTGGTTCTGTTCAACAGGTGCCCCAATGTGTCAAACTGGCTGACCTGATGTGAACCTGTTAGTTAACACGGTCCATATTTAGTGGCATAATGTGTAATATGTTATAATGTACTTCAAAAATTCATTTTGCCTTAATTCAAAACCCTAAATTGGA

Network for GWHGAAEX008241

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	79	231	1.80E-23
PF01061.23	ABC2_membrane	380	591	2.80E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.180
SRP064423	SRR2545915	Juvenile tuber	22.080
SRP108465	SRR5643513	five period of Gastrodia elata	12.240
	SRR5643514	five period of Gastrodia elata	10.390
	SRR5643515	five period of Gastrodia elata	11.690
	SRR5643524	five period of Gastrodia elata	9.890
	SRR5643525	five period of Gastrodia elata	13.510
	SRR5643528	five period of Gastrodia elata	11.530
	SRR5643658	five period of Gastrodia elata	12.130
	SRR5643659	five period of Gastrodia elata	19.780
	SRR5643660	five period of Gastrodia elata	20.590
	SRR5643661	five period of Gastrodia elata	17.780
	SRR5643662	five period of Gastrodia elata	17.280
	SRR5643663	five period of Gastrodia elata	20.140
	SRR5643664	five period of Gastrodia elata	17.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.060
SRP279888	Gastro	Gastrodia elata tuber	12.87
	Juven	Juvenile tuber	16.89
	Mother_Gastro	Mother tuber of Gastrodia elata	14.40
	Mother_Juven	Mother tuber of Juvenile	14.56