Detail information of GWHGAAEX008242/evm.TU.scaffold_212.27


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530779864|ref|YP_008431664.1|6.00E-26hypothetical protein N186_01315 [Thermofilum sp. 1910b]
KOGKOG00874.00E-129GTPase Rab11/YPT3, small G protein superfamily
nrgi|729326138|ref|XP_010535057.1|1.49E-128PREDICTED: ras-related protein RABA1f [Tarenaya hassleriana]
Swissprottr|Q9FJH0|RAA1F_ARATH1.00E-129Ras-related protein RABA1f
trEMBLtr|K4CFP5|K4CFP5_SOLLC7.00E-128Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc07g053480.2.1}
TAIRAT5G608604.00E-129RAB GTPase homolog A1F

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000212666573667739-
Transcript Sequence

Network for GWHGAAEX008242

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras161761.20E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding
GO:0003924Molecular FunctionGTPase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata2.600
SRR5643514five period of Gastrodia elata2.190
SRR5643515five period of Gastrodia elata2.270
SRR5643524five period of Gastrodia elata2.020
SRR5643525five period of Gastrodia elata0.160
SRR5643528five period of Gastrodia elata0.410
SRR5643658five period of Gastrodia elata0.250
SRR5643659five period of Gastrodia elata0.130
SRR5643660five period of Gastrodia elata0.220
SRR5643661five period of Gastrodia elata0.150
SRR5643662five period of Gastrodia elata0.220
SRR5643663five period of Gastrodia elata0.110
SRR5643664five period of Gastrodia elata0.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.110
SRR6049655Rhizomagastrodiae_C368-T10_good_111.900
SRR6049656Rhizomagastrodiae_C368-T07_good_17.620
SRR6049657Rhizomagastrodiae_C368-T07_good_12.550
SRR6049658Rhizomagastrodiae_C368-T04_good_14.040
SRR6049659Rhizomagastrodiae_C368-T04_good_13.940
SRR6049660Rhizomagastrodiae_C368-T01_good_12.130
SRR6049661Rhizomagastrodiae_C368-T04_good_13.730
SRR6049662Rhizomagastrodiae_C368-T01_good_12.860
SRR6049663Rhizomagastrodiae_C368-T01_good_12.810
SRR6049664Rhizomagastrodiae_C368-T10_good_113.420
SRR6049665Rhizomagastrodiae_C368-T10_good_113.420
SRP279888GastroGastrodia elata tuber 0.51
JuvenJuvenile tuber0.16
Mother_GastroMother tuber of Gastrodia elata 5.05
Mother_JuvenMother tuber of Juvenile 3.00