Gene detail

Detail information of GWHGAAEX008252/evm.TU.scaffold_212.37

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2135	3.00E-128	Proteins containing the RNA recognition motif
nr	gi\|672194785\|ref\|XP_008776381.1\|	0	PREDICTED: zinc finger CCCH domain-containing protein 27-like [Phoenix dactylifera]
Swissprot	tr\|Q0JDM0\|C3H27_ORYSJ	0	Zinc finger CCCH domain-containing protein 27
trEMBL	tr\|M0SFT2\|M0SFT2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P18660_001}
TAIR	AT3G27700	3.00E-128	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000212	888072	905977	+

Transcript Sequence
>GWHTAAEX008252 TATTGATCACCAGCCTAACTCATTCCGAACGTGCCTCCATCTCATTTCATCAGCCATTCCATTTTCCAAACCCAAGTCGCTCTCGTCGGCCTAGGGTTTTTGCCTTGCCTTTCTTCCCCCATCGATTAGCTCTTATCTGTTCACTGATGAGAGACGGGCACCTGGTGACATGAAATTTGAGCTCAACGCGCTGTCTCAATATCTCTCGAACAATCTTAAACCCTTGACTGCTGCAGACCCTAACATTCTTGCTGATTATGTGGTGGCATTGTTGAAAAATGACGTACCTGCAGGAGAGTTGCAGAAACTATGTGCTGATCGTCTTGAAGTTTTCCTTGGAGACAGGTCAATGTCTTTCACTATAAAACTTTTTGAGGCTCTACAAGAGGGTTCTTTCAAGAGCACTGGTGTAAAATTGAATGCCCTGAAAGATCCTGAATCATCTATGTCTCATACTGCAGTGGAGGCGCTGGATTTGAAAAGCTTGTTATCAAAGGAAGATCACCGCTCTAGTTCTTCAGAACCACTTAGTGATCCTGAAGATAAAGAAAACAGTGATGATGATGATCGCAACCACAAACATCGTAGGCGGGATGCTCGTGAGAACTCTTCTGATAATTCTGTTCAGGAACATCCAATAAGAAAGTTTAGTAGAAAGAAAAGCAGGAACTATGATAATGAACAGCTTTATATGGAAACAGGAGTTTGTTCCCCAGAAAATCAGAAGGAACTCAGTTCATCGGTAGATAAGGAAGTTCCGTCAAGATCAGAAAAGCGGCCATTTGGCATTCCGCCTTCAATGCGCTCTTCTTCAGATCTAAATTCTAGAGTAAGGCTAAATTCTTCCTTCAGAACTGATCAGGGACCTCGACTTGATTTGTCTTCTTCAGCATGCCGAGCACCTCTTGGTCGAGGTAGAGGAAGAAATTTAACTTCATGGGTTCAGCCTGATTCAAGATTCAGCTCGCTGGACCCGCTTGAGTTCACTCAACACATGGCTTCTCAAAGACCAGTTCATCCTGGTCTTTTTGTTGGCCCAGGTCTTCAAGGTGCAGGAAGTTCTCAGAGTGCATCTTGGGGTGCGTTTGGATTTATTCATGGAATTTCAAATGGTATCATGGATTCACTTCATCCTCTTAGCTTGCAGACAACCCTTCGGCCTGCTATTAATCCTATGAATCTTGGCATATCTCGACAACGGTGTAGAGATTTTGAGGAACGTGGATTTTGTCTCAGAGGAGACATGTGCCCTATGGAGCATGGTGTAAATCGAATTGTTGTTGAAGATGTTCAGAGCCTTTCACAATTCAATCTTCCTGTTTCAATACCTAATTCACATGCAATTGGGACACCATCTGGGGCAGGACCCTTACATCATGGTCTTGGGTCTTCAGTTCTTATGGTCAATAAAAGTTTACTTTCTAAAAATAACAAATCTACTGAAAATGAGGATGCACTGAGGCTGAATGGTTCCACATCTGTTATGGGAGGTGAATCTGATGTATATGATCCTGACCAACCTTTATGGAATAATAACACCGAATCATCTGCTACTCTTATGAGGCCCCCTACGCCAGACATGGATGATGACTCTTTATGGGATGGTGATACTTCTCGCAAGAACTTGAGGTTATCTGATGGCAATGAAGGCGACCTGCATAACAGAAATTTAATAGCTGATAATGGATCTAGGGGTGCAGGTTCCTCAGTTTGGGGCAGAATTGGGTCCGAGAATAAAGCAGATGTTGGGATTAAATTTGTGAATAGTAATTCTTCTACTGGACATCTTTCAAAAGGGACAAGGAATGGTAAAGAGGCAACTACTTCTAGTAGCCTTCCTTCAGACCAAAGCAAACTAGTTGTTTCTGAGGAGTGTGGTTCAAAAGTGGTGGTCTCTCAAGTTGCTTCAATGCCACGTGCTGATTTTGAGTTCAAGGGTGGACGAATGCAACAGAAAGCCTGTCGTACTTTATACGTAACTGGGATTCCTCAGAAGAATAATAGGCGGGAAGCACTTCTTTCACATTTTCAGAAATTTGGCGAGATATTAGATATATATATCCCTTTAAATAGTGAAAAAGCTTTTGTGCAGTTTTGTAAAAGAGAAGTAGCGGAAGCAGCTCTAAATTCTCCAGAAGCTGTGATGGGAAACCGTTTCATTAAACTATTCTGGGCTAATCGAGATAGAATTTCTAATGAAGGACAGGGCAGCCGTGAAGCTAAATCTTTTCAGTATCCTAGGGGGGTAGCCAACTTTGTTCGAATGCGACCTCCTGCTGTTGAAGTGGAAAAAGAAAATCTTTCATCGCCTGCTCAAAGGGAGAGCAATACAAAGTCTGTAGAAGCATTTGTGCCTTCTGTTGGACCCCAGAAGGGGGGTATATTGAATGGACCAAAAGTATTGTCTTCTCCTAAAAAGAAATTCAAGAGTTTGGAACTTTTGGAGGAACTTCGCAAAAAGCAGGAGCTTCTAGATCAAAAGCGCAGCGAATTTCAACGCCAGTTAGTTAAATTTGAAAGACAGGCTTCAATAAAAAAAGATGGGCCATCGGAGCAAGCAGTCAAACGACCAAAAATAGATATAGGAAACAGTCAGACTAAAACTGCTGATTCAGGGTCAACAACTATTAGCATTTCTGGGGATTTCCAGGATACTGGAAAATCTCTAGAGAGGAACAGTTTATCAGAGAACCTTCTCTCTCCAAACGCAAAAGCACATGCATCTACTGTGCAACAGTCTGTTCAAACTGTAAAACAAGCTGCACGAATGCCAGCTCCATACTCAAACAGATTTAAGCTTGATAATCGTCCTACTTCTTTCAGACTCTTGCCTCCTTTACCGGCCAAACTTTTGAATGTTGCTGTTTTGAAAGACCATTTTTCAAAATTCGGCGATCTTGCTTCCATAGTTTTTGAAGATGTGGAGGGGACTGAGTACACTGGCTCAAAGAATCCTGAAAAAAGCTTTGTCTGCGTAACTTTTCTTTCCCGTCATTCTGCCGAAAAGGCTTATCAAGCTGGTAAATTCTATGAGGGCTGCAATTTGAAGCTCTCCTGGGTGATCGCTGCCTCTCCAGTTGCTTGGAAAGGTCGCCACATCGAAGATATCGGATCCTCAAATTCAGTTTCTCATACGGCTCTAGAAAATGACACCAAACCTGAATCGATGTGTTCTTTGAGTGCTGTGGACCTTATCTGCAAACCTCCATTGTTGCCGAATGCAGGAGAGCTTGGTTGTACGCCGTTTCCAGAGCACCACAGTGCTGCAAAAACTGAATATGGTTTAAACGCAGAACTTATAAATTGCAATTTGAGCATCGTGTCCAAGCCGTTGATTGACACCTTGGAATCAGAGAACGAGAATGTGAACCACAATAATAAGGAATCGATGGTTGATGATGGCATTGAAGCCGGGATTGAGCGGTGAGATTTCCGGGAACTGCATTTAGGGTTTTCTTCTTCATTCCATCAGCAGGCAAGTTTCTTCTTCTTCTTTTTCTAACTTTTGGTATGTGCTGTATTTACTTAAATGCAGTTTAGAGTTATTAAGTTGTTGGATGATCATGAAAGGTCTTACTGCTTTGCATTGGAATTAGGGTTTTGTGATTAGCCTTGTGATGATGCAAAATGTATTTGTGGGAAAGGAGATTTTATTATATGCCCATCTATGCTTTTGTATTTTCTTTCATATTTTCAATACATGTAATTTCATTGACCAAAATTTGTTTAAATATTATTATTTTTTGCCAA

Network for GWHGAAEX008252

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	601	663	1.10E-05

Protein Sequence

>GWHPAAEX008252
MKFELNALSQYLSNNLKPLTAADPNILADYVVALLKNDVPAGELQKLCADRLEVFLGDRSMSFTIKLFEALQEGSFKSTGVKLNALKDPESSMSHTAVEALDLKSLLSKEDHRSSSSEPLSDPEDKENSDDDDRNHKHRRRDARENSSDNSVQEHPIRKFSRKKSRNYDNEQLYMETGVCSPENQKELSSSVDKEVPSRSEKRPFGIPPSMRSSSDLNSRVRLNSSFRTDQGPRLDLSSSACRAPLGRGRGRNLTSWVQPDSRFSSLDPLEFTQHMASQRPVHPGLFVGPGLQGAGSSQSASWGAFGFIHGISNGIMDSLHPLSLQTTLRPAINPMNLGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQSLSQFNLPVSIPNSHAIGTPSGAGPLHHGLGSSVLMVNKSLLSKNNKSTENEDALRLNGSTSVMGGESDVYDPDQPLWNNNTESSATLMRPPTPDMDDDSLWDGDTSRKNLRLSDGNEGDLHNRNLIADNGSRGAGSSVWGRIGSENKADVGIKFVNSNSSTGHLSKGTRNGKEATTSSSLPSDQSKLVVSEECGSKVVVSQVASMPRADFEFKGGRMQQKACRTLYVTGIPQKNNRREALLSHFQKFGEILDIYIPLNSEKAFVQFCKREVAEAALNSPEAVMGNRFIKLFWANRDRISNEGQGSREAKSFQYPRGVANFVRMRPPAVEVEKENLSSPAQRESNTKSVEAFVPSVGPQKGGILNGPKVLSSPKKKFKSLELLEELRKKQELLDQKRSEFQRQLVKFERQASIKKDGPSEQAVKRPKIDIGNSQTKTADSGSTTISISGDFQDTGKSLERNSLSENLLSPNAKAHASTVQQSVQTVKQAARMPAPYSNRFKLDNRPTSFRLLPPLPAKLLNVAVLKDHFSKFGDLASIVFEDVEGTEYTGSKNPEKSFVCVTFLSRHSAEKAYQAGKFYEGCNLKLSWVIAASPVAWKGRHIEDIGSSNSVSHTALENDTKPESMCSLSAVDLICKPPLLPNAGELGCTPFPEHHSAAKTEYGLNAELINCNLSIVSKPLIDTLESENENVNHNNKESMVDDGIEAGIER

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.860
SRP064423	SRR2545915	Juvenile tuber	38.010
SRP108465	SRR5643513	five period of Gastrodia elata	28.660
	SRR5643514	five period of Gastrodia elata	27.570
	SRR5643515	five period of Gastrodia elata	29.380
	SRR5643524	five period of Gastrodia elata	25.370
	SRR5643525	five period of Gastrodia elata	28.400
	SRR5643528	five period of Gastrodia elata	27.930
	SRR5643658	five period of Gastrodia elata	25.840
	SRR5643659	five period of Gastrodia elata	29.560
	SRR5643660	five period of Gastrodia elata	33.300
	SRR5643661	five period of Gastrodia elata	28.740
	SRR5643662	five period of Gastrodia elata	33.030
	SRR5643663	five period of Gastrodia elata	29.190
	SRR5643664	five period of Gastrodia elata	30.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.930
SRP279888	Gastro	Gastrodia elata tuber	33.65
	Juven	Juvenile tuber	32.65
	Mother_Gastro	Mother tuber of Gastrodia elata	27.56
	Mother_Juven	Mother tuber of Juvenile	35.03