Gene detail

Detail information of GWHGAAEX008253/evm.TU.scaffold_212.38

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2478	8.00E-143	Putative RNA polymerase II regulator
nr	gi\|672146037\|ref\|XP_008796955.1\|	0	PREDICTED: RNA polymerase II-associated factor 1 homolog [Phoenix dactylifera]
trEMBL	tr\|A0A067L8N5\|A0A067L8N5_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP40860.1}
TAIR	AT1G79730	8.00E-143	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000212	910481	946351	-

Transcript Sequence
>GWHTAAEX008253 TAAACCCTCAATTTCTCCCCCGTTTCCACCGTCTTGATAACATATCTTCTGCGCAGATCGAACGTACTTCTCCGGCGACCATCTTTTCCCCTTCTCCTCCACTGATCCGGCCGCTGCATTCGCCGACAAGTTCCGATCTCCAGCCATGGCTTCCTTCAGGCCCTTCCCACACCCTCCACCACCCTCATCGTCCTTCTTGCCCCCGCCGCCTCCAAACCAGACCCATATCGCTCCTCGTCCCCCGCTCCAATACCCTCTTCGCGGGGGATTTCCCGCATCTGCTTATGGCGCAGGTGCTCAACCTTACCAATTTGGCAATTCTTCCGCTGGTCCGCAACACAGCCAGCAACAGTACGCGTATCCTCCGCCACAGCCGCCATCAATCACGGGGGCGTCTCTATCGTCTTCTTCCTTTTCTGCTCATCAGCCGTCCGCTCAGTCCGCGCAGCTTCCTCGTTCCCAGTACTACCCTTCTTCACAGTACTCCTACTACAATCCGCCCCATCAACCTCCTCCTCCACCACCTCCACCGCCTTCGTCTCCTCCAAACGTCAGTTCCTCTTTACCCCCTCCACCACCCCTACCAGCTTCCCCTCCCCCTCCTCCCCCTCCGCCCGCCCATCTGGATCTCTCTCGGAAGTCAGCAATCCCTAACATTTCCGCTGCAGCCGGCCTTCCTCCAGCACCTGTCCTTGCCCCTACTTCTGCATCTGCCCACGCATCTTTAAGGCATCAGAAGTCTCATGTACCACAACCAGGCAAGTCTTTGTTACCGGGAAGGGCAGAGACAGAGGAAGAGAGGAAAGCGAGTAAGAGGAGGGAGTATGATAAGCAGAAACAGGATGAAAGAAGGCAGCTGATGCTGAAACAGTCGCAGGCAAAGGTACTGCAGAAAACTCAGATGCTGGCGGCTGCTAATGGTAGCGGAAGGCCTCATGGATCAATGATGGGATCAAAGATGGGTGATAGGAGGACCACTCCGTTACTGACCGGGGATAGAGTCGACAACAGATTGAAAAAGCCGACGACTTTCATATGCAAAATGAAGTTTAGGAATGAGTTGCCAGATCCTACAGCTCAACCGAAGTTATTAGCTATGAATACTCGTAAAGATAGATATACAAAATACACTATTACATCTTTGGAGAAAGTCTACAAACCCAAACTTTATCCCGAGCCAGATCTTGGAATCCCTCTGGATCTTCTTGACATTAGTGTGTACAATCGTCCTGCTGTTTGCCCGCCCCTTGCTCCAGAAGATGAGGAGTTATTGCGCGACATTGAAGTTGAAACTCCTGTCAAACAGGGTGGCATTCGAAAAAAAGAACGCCCAACAGAAAAAGGGGTATCATGGTTGGTTAATACAGAATATATTTCCTCTATGAGCATGGACACAGCCAAATTGTCTATGTCTGAAAAGCAAGCAAAAGAAATGAGGCAGTACAAGGAAGGCCAGAATCAATTTTTGGAAAACCTAAATAGTAGAGAAAAGAAAATTCAGGCTATCGAAGAATCTTTTAAGGCTTCTAGCTTACCTCCTGTGCATCAAACCAATCGTTCATTGAAACCTTTGAAGATAATGCCTTTGCTACCTGATTTTGGGAGGTATGACGATCGTTTTGTGATGGTGTCATTTGATAGTGAGCCAACTGCTGATGCGGAAATGTACAACAAATTAGATAGATCCATACGTGATGAACATGAATCACATGCTTTATTGAAGAGCTTTGTGGTAAATGGCTCTGATCCTTCAAAGCCTGAAAAATTTTTGGCATACATGGCTCCTGCTCCTGATGAGCTATCAAAGGACATGTACGATGAAAGTGAAGATATGTCATATTGTTGGGTTAGGGAGTATCACTGGGATGTTCGAGGCGATGATGCTGATGACCCCACAACATTCCTTGTCAACTTTGATGATAGTGTTGCACGATATCTGCCTCTACCCACGAAGCTTTTGTTAAAGAAAAAGAAGGCAAAAGAGGGGAGATCAGGAGATGAGGTTGAACAGCATCCTGTCCCTTCAAGAATAACCGTGAGAAAACGAGCATCCCTTGCTGTAACAGAAGTGATGGAATCTGGACAAATATCCCGAAATCAGGAGAAAGTGGATACTCCATACTCAAAGAAGGCCAGGTCTTTGAGAGAAGATGATTTTGATGATAGACCCGATCGTAGCATGGAAAATTTGGACCAATTTAGTGGAGATGATGACATTTCTGAATAATTCGAGCACTATGCTGTCAAAGTTTGGAGTGCTGCTTTCATCATCATATATACATAAATATATATGTATATATATTTATATAATGTTATGTCTATCTAGACATTGGTTTGAAATGGATACCCAATGGAAAAATCACAAGGCAGGGCAGCACGTTCTCAGTATTGAAGGAAGTTGCTATGTTCAAGAAGGAATATAAGCGTATATAAATCAAAATGTTAATCAGCTTGATTTTATCAATTTGATCTTTGTTGGTCTGCATTTATTATCTGTTCATTAACTTGCATTCATGCTCAAAATGTAAGCTTGTTTTTGAAATTTATCTTATGTACCTGTTTGGATTTGCAGGAATAAAGATCTTAGAATTCATAGTCGAGCTGATGAGTTATAATGCTTTCTTTTATGCTTACCCACATGCACGATTTGTAGTTTCATTTGCTTTTCTATAAAAAAATGGAAGCTTGGCCATTCTTGTGGTATTATCTGTTTTTCAACTGATCACACTTTACTTTGAATGAGAATCCACTTTTG

Network for GWHGAAEX008253

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03985.12	Paf1	296	636	7.40E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15174	PAF1	MAPK signaling pathway - yeast	map04011

Gene Ontology

GO term	Ontology	Name
GO:0006368	Biological Process	transcription elongation from RNA polymerase II promoter
GO:0016570	Biological Process	histone modification
GO:0016593	Cellular Component	Cdc73/Paf1 complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.140
SRP064423	SRR2545915	Juvenile tuber	27.160
SRP108465	SRR5643513	five period of Gastrodia elata	31.680
	SRR5643514	five period of Gastrodia elata	32.000
	SRR5643515	five period of Gastrodia elata	32.540
	SRR5643524	five period of Gastrodia elata	33.870
	SRR5643525	five period of Gastrodia elata	33.030
	SRR5643528	five period of Gastrodia elata	33.320
	SRR5643658	five period of Gastrodia elata	38.940
	SRR5643659	five period of Gastrodia elata	35.510
	SRR5643660	five period of Gastrodia elata	35.550
	SRR5643661	five period of Gastrodia elata	33.620
	SRR5643662	five period of Gastrodia elata	36.660
	SRR5643663	five period of Gastrodia elata	34.960
	SRR5643664	five period of Gastrodia elata	34.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.070
SRP279888	Gastro	Gastrodia elata tuber	27.48
	Juven	Juvenile tuber	40.60
	Mother_Gastro	Mother tuber of Gastrodia elata	30.81
	Mother_Juven	Mother tuber of Juvenile	37.59