Gene detail

Detail information of GWHGAAEX008256/evm.TU.scaffold_212.42

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672182185\|ref\|XP_008811331.1\|	1.49E-129	PREDICTED: uncharacterized protein LOC103722524 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0TRL4\|M0TRL4_MUSAM	5.00E-111	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P18610_001}
TAIR	AT3G26750	2.00E-42	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000212	983982	994600	-

Transcript Sequence
>GWHTAAEX008256 TCAAGAAGATGAACTCAGAAAGCCCTAGCTCTAGTAGGCGCTGGCAGTTCACTTGGGAAACACTACCTCACATCCCCATTCTCCGTCTATACCTCTTCAATCCGGAGATCGGCGATACCTCTGCCAAATGCCCCTTCGTCGAGGCCTCACTCAAGCTTGACCGCTTCCTCCTCCAAGTTTCTTGGCGGATAGATTGTGATATATCAGGAAGAGGCCGGAGATCATTTCTCTGCATTCCGGTTCCTAGAGTTCTGATCGATCCGGGATGCTCCGTGGTTGTCAAAACCACGGGAGACTATATCGAGGCCAAGCTCGCTCTCATTTTTCCAGTAAATCATCCTGTGGAGGCCGAACTACTGGGTGCTTCTGGGGTGGACGTCGATAAACGCTTACCTCTTTCTATGGGTTCTGATATAGATAAATTTCCTTCTGAAGGGGTGAATTTCTTCTGCAAGGTTTGCTCAGCAAAGTTATCAAGGCAACCTATCAGGAATTTTGTAGAAATACCATCATTTAATTGGCAAGAGGTGGCTGATAATTGGTTCGGTGGATGTTGTTCATTTGGAGGAGCCAGCGAAAAGTTGGTATCAAAATACATGGAAACTTTTGAGTGTAAAGAGGGAACATGTCTCTTGGATAGAGCTACAATTGCCGTCTGTGAGCATGATCTCGAAGGTGCCGTTGTTTCGGAACTAACAGCAAGGAGTTTTGGATCGAAATCTTCTGAACATAAGGATACTACATCTATGCATCATGATTTTGTTTCATCACGATTTCTTTATAGTAATCAGCATAGTTCGGTTGGAACTAAAGATATAAATATAGATTGCTTGAACCACAATCTTAATCAAATATCATATCATGAAAATATATATTCAGAATCTGTTGGTGAAAGAGGTTCTGACTTTGGCTCTCATTGTTGCATCTCGGAGAAGATGCATATATCTAATCATACTGATTCCAGAACTAATTCAGAAGCCTTGACCACAGCACACACTACCCAACGATCTCTCGAAGTTTATGGAAGCGGATTTATAATTTTTCCTTCAAACCTATCAAAAAAGTTAGAGTGCGTCGAATTATTTTGCAGGCATTGTTCATCACCTCTTGGATCATATACACGTGCAAATGGCTCAGTGAACTCGGCAGTTGGTGGAATCAGATTATTTAAGTGTTACATATCCTCTTCTGCTGTTGTTGGAGCTTCTGATGATGCTTTCAGAATGTATACACTGGAAAGCATGTTTACAAATGCGCTGATCGAGGGAGCACAGGACGAACTTTCATTCCGCACAATGGTATGTGATCTGAGGACAAAGCTGCCTGCGCTTGAAATAGTCCTCTTGAATTCGAGAGCCTGGCTTTGTTCAGGCTTTTGCCTTGAAGATGCCGAGACAATAGGAAGACATCCCGCAGTACATATGCAGCCTGTCGCCAAGGTTCTTTTTGCCGGAGAAGAAGCCCTCTCAGAGATTGAGCAGAGCAGGTCAGGCCGGGCAGGTATCGAAGAAGTGTACATGATGAACCGAGAAATAGAAGAACTCAGGAGGTCTTTGAATTCGTCGGCTTCCAGGCTCCCGCGCTCATGCTCTTGGCTTCAAGGGATGTCTCTGTCATTCCTGGAAAGGTAGGAAAATGCTTTATGATGATGCCTCCTGAAATCTTCCCTGTATGCATATTTAGAATCCAAACTTTAGTATTCATGCAATGATCTAATCACAATGTGTCGTCATTAAGGAGAGAAAGAAGTGTTAAGACGTCAGCTTTTTTTAATATGTAATTTAGGGAGGAAAATTATGAAATTATTAATGATTAATGAGTTGGTATATATTTACAATTCTGCAGTAACTTGGTCTTTTCTTAAAAATCCTCTTCATTTTGGGTAGAGTTTAATCGTTTAACTTATCACTCAATTTGAAAATTTCAAGCAGATTTTGAATCAGG

Network for GWHGAAEX008256

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09814.8	HECT_2	142	528	3.70E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.190
SRP064423	SRR2545915	Juvenile tuber	6.000
SRP108465	SRR5643513	five period of Gastrodia elata	5.570
	SRR5643514	five period of Gastrodia elata	4.280
	SRR5643515	five period of Gastrodia elata	4.630
	SRR5643524	five period of Gastrodia elata	4.320
	SRR5643525	five period of Gastrodia elata	3.550
	SRR5643528	five period of Gastrodia elata	4.140
	SRR5643658	five period of Gastrodia elata	6.550
	SRR5643659	five period of Gastrodia elata	8.130
	SRR5643660	five period of Gastrodia elata	7.460
	SRR5643661	five period of Gastrodia elata	8.450
	SRR5643662	five period of Gastrodia elata	6.650
	SRR5643663	five period of Gastrodia elata	7.400
	SRR5643664	five period of Gastrodia elata	7.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.210
SRP279888	Gastro	Gastrodia elata tuber	10.47
	Juven	Juvenile tuber	9.79
	Mother_Gastro	Mother tuber of Gastrodia elata	6.67
	Mother_Juven	Mother tuber of Juvenile	5.53