Detail information of GWHGAAEX008257/evm.TU.scaffold_212.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672189577|ref|XP_008775031.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g54980, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9SV46|PP282_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g54980, mitochondrial (Precursor) |
| trEMBL | tr|M0SVV4|M0SVV4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05250_001} |
| trEMBL | tr|M0SVV4|M0SVV4_MUSAM | 1.00E-68 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05250_001} |
| TAIR | AT3G54980 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000212 | 1021902 | 1033103 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008257
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 257 | 283 | 2.00E-05 |
| PF01535.19 | PPR | 289 | 318 | 0.58 |
| PF01535.19 | PPR | 324 | 352 | 0.00024 |
| PF13041.5 | PPR_2 | 356 | 404 | 1.30E-10 |
| PF01535.19 | PPR | 431 | 457 | 0.0025 |
| PF13041.5 | PPR_2 | 460 | 503 | 1.40E-08 |
| PF13041.5 | PPR_2 | 529 | 578 | 1.40E-15 |
| PF13041.5 | PPR_2 | 603 | 648 | 4.50E-15 |
| PF12854.6 | PPR_1 | 665 | 696 | 4.80E-09 |
| PF13041.5 | PPR_2 | 704 | 750 | 1.10E-13 |
| PF12854.6 | PPR_1 | 773 | 802 | 2.50E-07 |
| PF13041.5 | PPR_2 | 809 | 853 | 1.30E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.350 |
| SRR2545915 | Juvenile tuber | 11.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.880 |
| SRR5643514 | five period of Gastrodia elata | 5.640 | |
| SRR5643515 | five period of Gastrodia elata | 6.360 | |
| SRR5643524 | five period of Gastrodia elata | 5.970 | |
| SRR5643525 | five period of Gastrodia elata | 5.930 | |
| SRR5643528 | five period of Gastrodia elata | 6.660 | |
| SRR5643658 | five period of Gastrodia elata | 6.600 | |
| SRR5643659 | five period of Gastrodia elata | 6.930 | |
| SRR5643660 | five period of Gastrodia elata | 5.410 | |
| SRR5643661 | five period of Gastrodia elata | 6.650 | |
| SRR5643662 | five period of Gastrodia elata | 8.510 | |
| SRR5643663 | five period of Gastrodia elata | 7.680 | |
| SRR5643664 | five period of Gastrodia elata | 8.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.32 |
| Juven | Juvenile tuber | 7.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.64 | |
| Mother_Juven | Mother tuber of Juvenile | 8.03 |