Detail information of GWHGAAEX008267/evm.TU.scaffold_212.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|257094183|ref|YP_003167824.1| | 1.00E-10 | WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] |
| KOG | KOG4547 | 2.00E-161 | WD40 repeat-containing protein |
| nr | gi|672143839|ref|XP_008795805.1| | 0 | PREDICTED: uncharacterized protein LOC103711445 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|E4Z8N7|E4Z8N7_MALDO | 0 | Putative transducin family protein / WD-40 repeat family protein {ECO:0000313|EMBL:CBL94162.1} |
| TAIR | AT5G11240 | 2.00E-161 | transducin family protein / WD-40 repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000212 | 1205757 | 1218002 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008267
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 13 | 33 | 0.021 |
| PF00400.31 | WD40 | 192 | 228 | 0.00014 |
| PF04003.11 | Utp12 | 491 | 582 | 1.70E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14546 | UTP5, WDR43 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.290 |
| SRR2545915 | Juvenile tuber | 38.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.830 |
| SRR5643514 | five period of Gastrodia elata | 31.620 | |
| SRR5643515 | five period of Gastrodia elata | 28.100 | |
| SRR5643524 | five period of Gastrodia elata | 31.490 | |
| SRR5643525 | five period of Gastrodia elata | 27.500 | |
| SRR5643528 | five period of Gastrodia elata | 27.360 | |
| SRR5643658 | five period of Gastrodia elata | 24.440 | |
| SRR5643659 | five period of Gastrodia elata | 42.140 | |
| SRR5643660 | five period of Gastrodia elata | 43.890 | |
| SRR5643661 | five period of Gastrodia elata | 39.790 | |
| SRR5643662 | five period of Gastrodia elata | 43.840 | |
| SRR5643663 | five period of Gastrodia elata | 44.970 | |
| SRR5643664 | five period of Gastrodia elata | 41.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 46.83 |
| Juven | Juvenile tuber | 43.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.55 | |
| Mother_Juven | Mother tuber of Juvenile | 33.29 |