Gene detail

Detail information of GWHGAAEX008268/evm.TU.scaffold_212.57

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1816	8.00E-121	Ubiquitin fusion-degradation protein
nr	gi\|743757288\|ref\|XP_010921317.1\|	0	PREDICTED: uncharacterized protein LOC105044916 [Elaeis guineensis]
trEMBL	tr\|M0S2Y4\|M0S2Y4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P25270_001}
TAIR	AT4G15420_2	8.00E-121	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000212	1273960	1291426	+

Transcript Sequence
>GWHTAAEX008268 CTCCTTCCTAGCAGCCCAATAAGTAATTGACGCAGAAAAGCGTTGAAATTTTCGGGTAAGCTAAACTCAGCCAATTCAAAATTCCCTTTCCGCTTCCTTGGAATTATTTTGAAGCGATCAACAGCACAAATTTTTATAGCAGCGGCAAGGAATCGGAAGAGAAGTGCTTGATTGTGCTAGCTACATGGATTTTGAGCTTAGGGCAGCTCAGGAGAAGCTGGAAAGAGAGCAGAAAGAGAGAAAGGAGAGGGCTAAGGCGAGGGCGGAAATAGAGAGGAAGGCCAGAGCCGAATCTGCTCGACGCCGAGAGGCCCTTGAGGCTGTTCAGCGGAACAGAAGGATCGATACCGAGAATGCCCGTCTCAAGGAAGAGCAACAATTGGCGGAAGCCCTGGTTCTTGGTAATGGAATTGTATTTTCACGAACACTTGAAGCTCTTCAGTTTAATGGCCATGGAGATAAGATCAAGTTACCAACATCATGTTTTACTGAGTTATCTGATAAAGGAGCTTTGGATAAAGGCCCCATGTTTTTCAAACTTTCAAGAATTGATAGACTAGTCTCTTCAGCACCTAATCTTTATGCGGAACAAGAGAATGGAACAACACATTCTGGTGTTTTGGAATTCACTGCAATGGAAGGAACAGTAGAGCTACCTATACACGTTTGGAACAATTTATTCTCTAATGAAATTCCGGATGTTCCGATAATTGAAGTGCGCTATGTAAGCATTCCTAAAGGATCTTATGCTAAACTAAAACCTGAAAGTATGGGCTTTTCTGATATTCCAAACCACAAGGCCGTGCTTGAAACAGCTCTTAGGAAGCATGCAACACTTTCTCAGGGTGAGGTTATTATTGTTAATCATGGAGAAATGAGCTATAAGCTTAGCGTTCTTGAGTTAAAACCTTCATCAAGTGTTTCTGTTTTAGAAACTGATATTGAAGTTGACATTGAGGCTCCTGATTCTATGCTAGATGAGGTTGAGAATCATCTCTTACTTATACCGCTTGTACTCGGAAAGGTTGATTCAGGACGAATAATGGAAGGAAAGTTTACTTATTATAAGTTCTTCTTGGATGAAAATATCCACGAGAAAGTTGCATCCGGATGCATGAATGTTGAAGTAAGGCTTGAAGTTGATACATCCGATGGTGATATTGATATATATGTTTCTCGCCATCCTTTGGTATTCCCTACTCAACACCGTCATGAATGGTCATCTCATGAGACGGGGTCAAAAACTCTGATACTAAGCTCAAAGAATGTGAATATGCTTGCTGGTACTTACAGCATTGGTGTTTTTGGCTTCAAGGGATGGACAAGATATATGATATCTGTGTCTCTCAAAGAAAACAGCAATTCAAGATTTGCTCAGTCTGACCATGGAGGGCCACAAATAGATGATGATGCGGTAGAATGTAGAAATTGCAGGCACCATATTTCGAGTCGTACCATTTTACTTCATGAGGCATATTGCATCAGGCACAATGTTATTTGCCAAGAAGATGGCTGTGGAGTTGTTCTCAGAAAAGAAGAAGCTGCCAACCATATGCACTGTGTGAAATGTAGAAAAGCTTTCAAAACCGGGGAGATGGAAAAGCATATGAAGGTATTTCATGCACCGACCAACTGCACATGTGGAATGATTCTAGAAAAGGAAGAAATGGTGCGGCATCAGTCGGCAAGCTGCCCATTGCGCTTGATAGCCTGCAGGTTCTGCGGGGACTTTGTGCAAGCAGGGAGCCCTCCGGCGGACGTGCGCGATCGGCTGAGAGGGCTTTCGGAGCACGAGAGCGTCTGCGGCTCAAGAACCACTCCTTGCGATTCATGCGGCCGTGCCGTCATGCTCAAAGACATGGACATTCATCTAATTGCTGTCCACCAGAAGAGCTGACCAGCCTCATACTTTCCTAGACCCATACTTCATCCCTTTTCATTACTAGTTGAAGAAAACACCTTTATAAATATGCATACATATATATTTATATATATTTATTAGCTGTAAGTATTTGTTGGATTTGATTTATATTCGCCCATTAGTATGGTGGATTAGTGTTTCTTATTAGTATATGAAGTGGAAAAATGAGAGATTTGAATTCTAATTTAAGGATCCAAAAAACCTGTGCAGAAAATCACAAAAAGAGCATTAGTTTTCAGAGA

Network for GWHGAAEX008268

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03152.13	UFD1	89	260	1.30E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.570
SRP064423	SRR2545915	Juvenile tuber	42.600
SRP108465	SRR5643513	five period of Gastrodia elata	32.470
	SRR5643514	five period of Gastrodia elata	30.140
	SRR5643515	five period of Gastrodia elata	34.520
	SRR5643524	five period of Gastrodia elata	36.820
	SRR5643525	five period of Gastrodia elata	20.750
	SRR5643528	five period of Gastrodia elata	41.290
	SRR5643658	five period of Gastrodia elata	25.000
	SRR5643659	five period of Gastrodia elata	36.850
	SRR5643660	five period of Gastrodia elata	41.160
	SRR5643661	five period of Gastrodia elata	36.350
	SRR5643662	five period of Gastrodia elata	35.350
	SRR5643663	five period of Gastrodia elata	33.440
	SRR5643664	five period of Gastrodia elata	32.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.510
SRP279888	Gastro	Gastrodia elata tuber	28.67
	Juven	Juvenile tuber	33.80
	Mother_Gastro	Mother tuber of Gastrodia elata	65.00
	Mother_Juven	Mother tuber of Juvenile	60.17