Gene detail

Detail information of GWHGAAEX008269/evm.TU.scaffold_212.58

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521462574\|ref\|YP_008149444.1\|	1.00E-28	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
KOG	KOG0061	0	Transporter, ABC superfamily (Breast cancer resistance protein)
nr	gi\|156556174\|emb\|CAO94661.1\|	0	ATP Binding Cassette Transporter (CrWBC1) [Catharanthus roseus]
Swissprot	tr\|Q9SIT6\|AB5G_ARATH	0	ABC transporter G family member 5
trEMBL	tr\|A7MAN9\|A7MAN9_CATRO	0	ATP Binding Cassette Transporter (CrWBC1) {ECO:0000313\|EMBL:CAO94661.1}
TAIR	AT2G13610	0	ABC-2 type transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000212	1292594	1294949	-

Transcript Sequence
>GWHTAAEX008269 ATATAGTGATGCATATGATTATGTAAGTATAATATTTTTTAATTTTAAGAGAAATGTGTTCATCATTCAATACTAAGGAAGCCTATTAATTTTAACAGTAGCTGGTATTGTTTTTTTAAGTTGCAATACATTTTTACAACAATGTTATGCTCATGCAGTGTGATGCATTCGATCTCAAATAAGGTTAAAGTTGATGCATAGTGCTACGGCTATTTAAAGGCTTGGTGCAGAAGACTGGTGGAGAAAGGAGAGTCGATGAGGAAGAGGGAGGAGTACGAAATAAAGGCGAGGTGCCTGAGCTACAAAATCCCGGCGGGCAGCAGCGGCTGGAGGAAGATCTGGAGGAGCGGCGAGGCGGGAGGGGAGAGGCATGTGCTGCAGGACGTGTGGTGCCGAGCGGGGCCGCGGGAGATATTGGCGGTGATGGGGCCGAGCGGGGCAGGGAAATCGACACTGCTGAGGCTGCTGGCAGGGCGGCTGCCGGCGCCCCCCTGCTCGATCCTGGTGAACGATCGGCCGGTGGGTAGGCCATCGTTTCTGCGGCGCATATCGGCGCTGGTGCCACAGACGGACTCCCTCTTCCCGCTGCTGACGGTGGGGGAGACGGTGGCCTTCAGCGCGCGCATGCGCCTGGGGCTGTCAGGGGCATCTCTGGGCCCCCGCGTGGAGGCCCTGCTGGCCGAGCTCCGTCTGTCCCACGTGGCGTCGCGCTGTGTGGGCTCGGTCTCTGGCGGGGAGCTGAGGCGGGTGTCCATCGCAGTTGAGGCGGTGGGGGACCCGGCTGTGATGGTGCTGGACGAGCCCACCTGTGGACTAGACTCGGCGTCAGCCCTCCAGATCGTGGGCTTGCTGCGCTCCATGGCGGAGTCCGGGGGGCGGACGGTCGTGCTGAGCATCCACCAGCCCTGCTCCCGCATAGTCCACCTCTTCGGCTCCCTCCTCCTTCTGTCCCAAGGTAGAGTACTCCACCAGGGAGGAGTCCCCGACCTGGTCGCCCGCCTCGCCTCCGCAGGCAGCCCCCTCCCGCCCCACGCCAACCCAGTCGAATTCGCAATCGCCGCCATCGCCCGCCTATCCGACAGAGCTTCCGCGCCCGACCACTCCACCCTGCACCAGCCCGAATTCCCCACTTCCGACCCGGGCCACGACGATGATTATGATGCTCAGCGGTGCCGCTATGCCAACAGCCAAGCAACGGAGACTGCGATCCTTGCGCTGCGGTTCGCCAAGAGTGTGTCACGCACCAAGGAGCTCTACGCCTGCCGAACCGCCCAAATGCTGCTGGCGGGGTTGGTGCTTGGCTCCATCTTCTACGACCTGAAGCCGGACGTGGGGGGGGCGCGCGACCGGGCAGGGCTCTTCGCGTTCATTCTCACGTTCCTGCTCTCGTGCACGGCGGCGGAGGCGCTGCCGCTGTTCCTGAGGGAGAGGGAGGTCCTGGAGAAGGAGACCTCCTGCGGGGCCTATAGGGTGTCTTCCTACGTGCTGGCCAATGCCGCAGTCTTCCTTCCCTTTCTGCTGCTCTTGGCGTTGCTTTTCGCGTCGCCGCTCTACTGGCTCGCCAACCTGCGCCGGAGCGCGGCGTCCTTCGCCTTCTTCGTCCTCCTTGTCTGGCTCGTCCTCTGCGCCGGAAACTCCGTTGTGCTCTGCTTCAGCTCTCTCGCTCCCGACTTCGTCGTGGGGAACTCCCTCGTCGCTGGGGCCATGGGATCCTTCTTCCTCTTCTCCGGCTACTTCATACGCAAGGAGGGGATGCCCGCCTGCTGGCTCTTCATGAACTACCTCTCCCTATTCAAGTACCCCTTTGAGGCCTTTCTGCTCACCGAGTTTGGAGCCGGAGAGACCTGCTTCCAGACACACTACGGTGCCTGCATCCTCCGTGGCACCGACCTTTTGACCAAAGAGGGCTTCGCCGGAGCCAGCCGCTGGACCGACATCGTCGTCATCCTCGCCTTCATACTCACCTACAGGTTCTGCGCCTACATCATACTCACCCTCAGGTGCAAGTGACGGGTACTCCTACAACGGCCATGTCACGTGCGGTGCCGTGCGGTGCGGTGCCACCATCCGGCATGTCACATGCACCTCTACCATCAATGACTGGATTGGCAATTTGCATAGCAGAAAGGACCCCCGTGTTATTTTATTTTCCTGTGCTCTCAAAAAAAGGATGTTTTGTCCCGACCATTCACGGGGCTTGTTTTCTTCACACACCGATTTGTGACTTTTTGTTCATGGGAGGACTATCGCTTATGGGTCCCATCCATACCCAACGCTTTAGGAACTGTTTTTTATTTTCTTTTTGTCAACAATACAGTAACGTAATAATAATAAAAAGAGAATACTGAAGTGATAT

Network for GWHGAAEX008269

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	46	184	4.80E-22
PF01061.23	ABC2_membrane	317	525	2.00E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05681	ABCG2, CD338	ABC transporters	map02010
K05681	ABCG2, CD338	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.060
SRP064423	SRR2545915	Juvenile tuber	0.970
SRP108465	SRR5643513	five period of Gastrodia elata	5.090
	SRR5643514	five period of Gastrodia elata	9.100
	SRR5643515	five period of Gastrodia elata	1.530
	SRR5643524	five period of Gastrodia elata	3.360
	SRR5643525	five period of Gastrodia elata	0.060
	SRR5643528	five period of Gastrodia elata	0.170
	SRR5643658	five period of Gastrodia elata	0.250
	SRR5643659	five period of Gastrodia elata	0.130
	SRR5643660	five period of Gastrodia elata	0.230
	SRR5643661	five period of Gastrodia elata	0.180
	SRR5643662	five period of Gastrodia elata	0.060
	SRR5643663	five period of Gastrodia elata	0.130
	SRR5643664	five period of Gastrodia elata	0.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.530
SRP279888	Gastro	Gastrodia elata tuber	0.05
	Juven	Juvenile tuber	0.11
	Mother_Gastro	Mother tuber of Gastrodia elata	0.13
	Mother_Juven	Mother tuber of Juvenile	0.53