Detail information of GWHGAAEX008271/evm.TU.scaffold_213.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307545117|ref|YP_003897596.1|3.00E-46glycine cleavage system protein H [Halomonas elongata DSM 2581]
KOGKOG33736.00E-71Glycine cleavage system H protein (lipoate-binding)
nrgi|743804022|ref|XP_010927080.1|8.75E-78PREDICTED: glycine cleavage system H protein 2, mitochondrial-like [Elaeis guineensis]
Swissprottr|O82179|GCSH2_ARATH2.00E-71Glycine cleavage system H protein 2, mitochondrial (Precursor)
trEMBLtr|M5WVL5|M5WVL5_PRUPE9.00E-76Uncharacterized protein {ECO:0000313|EMBL:EMJ13388.1}
TAIRAT2G351206.00E-71Single hybrid motif superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002162304442774-
Transcript Sequence

Network for GWHGAAEX008271

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01597.18GCV_H271462.50E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02437gcvH, GCSH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0019464Biological Processglycine decarboxylation via glycine cleavage system
GO:0005960Cellular Componentglycine cleavage complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms401.880
SRR2545915Juvenile tuber353.960
SRP108465SRR5643513five period of Gastrodia elata216.300
SRR5643514five period of Gastrodia elata268.420
SRR5643515five period of Gastrodia elata219.360
SRR5643524five period of Gastrodia elata230.240
SRR5643525five period of Gastrodia elata606.100
SRR5643528five period of Gastrodia elata843.530
SRR5643658five period of Gastrodia elata634.690
SRR5643659five period of Gastrodia elata165.210
SRR5643660five period of Gastrodia elata175.150
SRR5643661five period of Gastrodia elata142.750
SRR5643662five period of Gastrodia elata181.060
SRR5643663five period of Gastrodia elata198.960
SRR5643664five period of Gastrodia elata169.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1138.650
SRR6049655Rhizomagastrodiae_C368-T10_good_1110.070
SRR6049656Rhizomagastrodiae_C368-T07_good_1171.320
SRR6049657Rhizomagastrodiae_C368-T07_good_1165.790
SRR6049658Rhizomagastrodiae_C368-T04_good_1163.890
SRR6049659Rhizomagastrodiae_C368-T04_good_1170.460
SRR6049660Rhizomagastrodiae_C368-T01_good_1155.980
SRR6049661Rhizomagastrodiae_C368-T04_good_1150.260
SRR6049662Rhizomagastrodiae_C368-T01_good_1180.030
SRR6049663Rhizomagastrodiae_C368-T01_good_1161.380
SRR6049664Rhizomagastrodiae_C368-T10_good_1217.590
SRR6049665Rhizomagastrodiae_C368-T10_good_1217.590
SRP279888GastroGastrodia elata tuber 173.98
JuvenJuvenile tuber124.56
Mother_GastroMother tuber of Gastrodia elata 443.41
Mother_JuvenMother tuber of Juvenile 217.26