Detail information of GWHGAAEX008276/evm.TU.scaffold_213.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|108757796|ref|YP_634565.1|0malate synthase [Myxococcus xanthus DK 1622]
KOGKOG12610Malate synthase
nrgi|8886863|gb|AAF80589.1|AF223418_10malate synthase [Asparagus officinalis]
Swissprottr|P17815|MASY_RICCO0Malate synthase, glyoxysomal
trEMBLtr|Q9LLC4|Q9LLC4_ASPOF0Malate synthase {ECO:0000256|RuleBase:RU000555}
TAIRAT5G038600malate synthase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000216214774217346-
Transcript Sequence

Network for GWHGAAEX008276

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01274.21Malate_synthase145451.50E-210
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01638aceB, glcB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630

Gene Ontology

GO term OntologyName
GO:0006097Biological Processglyoxylate cycle
GO:0003824Molecular Functioncatalytic activity
GO:0004474Molecular Functionmalate synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms114.810
SRR2545915Juvenile tuber142.720
SRP108465SRR5643513five period of Gastrodia elata198.370
SRR5643514five period of Gastrodia elata164.830
SRR5643515five period of Gastrodia elata176.240
SRR5643524five period of Gastrodia elata120.870
SRR5643525five period of Gastrodia elata390.430
SRR5643528five period of Gastrodia elata200.680
SRR5643658five period of Gastrodia elata511.630
SRR5643659five period of Gastrodia elata107.420
SRR5643660five period of Gastrodia elata170.750
SRR5643661five period of Gastrodia elata126.670
SRR5643662five period of Gastrodia elata110.700
SRR5643663five period of Gastrodia elata101.760
SRR5643664five period of Gastrodia elata161.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1266.320
SRR6049655Rhizomagastrodiae_C368-T10_good_1125.090
SRR6049656Rhizomagastrodiae_C368-T07_good_1218.040
SRR6049657Rhizomagastrodiae_C368-T07_good_1383.410
SRR6049658Rhizomagastrodiae_C368-T04_good_1418.050
SRR6049659Rhizomagastrodiae_C368-T04_good_1576.440
SRR6049660Rhizomagastrodiae_C368-T01_good_1312.970
SRR6049661Rhizomagastrodiae_C368-T04_good_1380.900
SRR6049662Rhizomagastrodiae_C368-T01_good_1109.600
SRR6049663Rhizomagastrodiae_C368-T01_good_1125.410
SRR6049664Rhizomagastrodiae_C368-T10_good_196.380
SRR6049665Rhizomagastrodiae_C368-T10_good_196.380
SRP279888GastroGastrodia elata tuber 142.32
JuvenJuvenile tuber61.53
Mother_GastroMother tuber of Gastrodia elata 132.37
Mother_JuvenMother tuber of Juvenile 121.62