Detail information of GWHGAAEX008278/evm.TU.scaffold_213.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|315500487|ref|YP_004089290.1| | 1.00E-68 | glycoside hydrolase clan gh-d [Asticcacaulis excentricus CB 48] |
| KOG | KOG2366 | 9.00E-173 | Alpha-D-galactosidase (melibiase) |
| nr | gi|743814080|ref|XP_010929920.1| | 0 | PREDICTED: uncharacterized protein LOC105051276 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q42656|AGAL_COFAR | 4.00E-20 | Alpha-galactosidase (Precursor) |
| trEMBL | tr|M0TAV5|M0TAV5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P28100_001} |
| TAIR | AT3G26380 | 9.00E-173 | Melibiase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000216 | 345813 | 367222 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008278
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16499.4 | Melibiase_2 | 200 | 374 | 5.20E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH27 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.040 |
| SRR2545915 | Juvenile tuber | 16.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.020 |
| SRR5643514 | five period of Gastrodia elata | 34.870 | |
| SRR5643515 | five period of Gastrodia elata | 27.110 | |
| SRR5643524 | five period of Gastrodia elata | 27.400 | |
| SRR5643525 | five period of Gastrodia elata | 7.970 | |
| SRR5643528 | five period of Gastrodia elata | 7.380 | |
| SRR5643658 | five period of Gastrodia elata | 7.730 | |
| SRR5643659 | five period of Gastrodia elata | 18.630 | |
| SRR5643660 | five period of Gastrodia elata | 16.170 | |
| SRR5643661 | five period of Gastrodia elata | 18.510 | |
| SRR5643662 | five period of Gastrodia elata | 13.160 | |
| SRR5643663 | five period of Gastrodia elata | 17.500 | |
| SRR5643664 | five period of Gastrodia elata | 13.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 42.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 73.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 54.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 82.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 82.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.12 |
| Juven | Juvenile tuber | 9.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.90 | |
| Mother_Juven | Mother tuber of Juvenile | 9.47 |