Detail information of GWHGAAEX008282/evm.TU.scaffold_213.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189218303|ref|YP_001938945.1|1.00E-15RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
KOGKOG01266.00E-89Predicted RNA-binding protein (RRM superfamily)
nrgi|695067373|ref|XP_009380602.1|8.75E-99PREDICTED: zinc finger CCCH domain-containing protein 25-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q10B98|C3H25_ORYSJ4.00E-92Zinc finger CCCH domain-containing protein 25
trEMBLtr|M0RKG6|M0RKG6_MUSAM3.00E-99Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P22410_001}
TAIRAT3G471206.00E-89RNA recognition motif (RRM)-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000216378629398645+
Transcript Sequence

Network for GWHGAAEX008282

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1381087.00E-20
PF00642.23zf-CCCH1281512.40E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.980
SRR2545915Juvenile tuber16.430
SRP108465SRR5643513five period of Gastrodia elata10.540
SRR5643514five period of Gastrodia elata11.840
SRR5643515five period of Gastrodia elata12.550
SRR5643524five period of Gastrodia elata12.480
SRR5643525five period of Gastrodia elata12.240
SRR5643528five period of Gastrodia elata13.320
SRR5643658five period of Gastrodia elata18.610
SRR5643659five period of Gastrodia elata14.010
SRR5643660five period of Gastrodia elata16.000
SRR5643661five period of Gastrodia elata14.070
SRR5643662five period of Gastrodia elata14.290
SRR5643663five period of Gastrodia elata14.220
SRR5643664five period of Gastrodia elata14.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.460
SRR6049655Rhizomagastrodiae_C368-T10_good_14.690
SRR6049656Rhizomagastrodiae_C368-T07_good_110.200
SRR6049657Rhizomagastrodiae_C368-T07_good_19.920
SRR6049658Rhizomagastrodiae_C368-T04_good_110.430
SRR6049659Rhizomagastrodiae_C368-T04_good_111.970
SRR6049660Rhizomagastrodiae_C368-T01_good_19.920
SRR6049661Rhizomagastrodiae_C368-T04_good_19.960
SRR6049662Rhizomagastrodiae_C368-T01_good_18.400
SRR6049663Rhizomagastrodiae_C368-T01_good_19.150
SRR6049664Rhizomagastrodiae_C368-T10_good_19.930
SRR6049665Rhizomagastrodiae_C368-T10_good_19.930
SRP279888GastroGastrodia elata tuber 16.03
JuvenJuvenile tuber12.35
Mother_GastroMother tuber of Gastrodia elata 17.29
Mother_JuvenMother tuber of Juvenile 11.68