Detail information of GWHGAAEX008284/evm.TU.scaffold_213.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427733813|ref|YP_007053357.1|6.00E-102membrane protease FtsH catalytic subunit [Rivularia sp. PCC 7116]
KOGKOG07310AAA+-type ATPase containing the peptidase M41 domain
nrgi|743873103|ref|XP_010906729.1|0PREDICTED: ATP-dependent zinc metalloprotease FtsH [Elaeis guineensis]
Swissprottr|O19922|FTSH_CYACA2.00E-98ATP-dependent zinc metalloprotease FtsH {ECO:0000255|HAMAP-Rule:MF_01458}
trEMBLtr|M0SF44|M0SF44_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P16280_001}
TAIRAT3G162900AAA-type ATPase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000216396551478129-
Transcript Sequence

Network for GWHGAAEX008284

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.28AAA4455772.20E-42
PF01434.17Peptidase_M417858322.00E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006508Biological Processproteolysis
GO:0005524Molecular FunctionATP binding
GO:0004222Molecular Functionmetalloendopeptidase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.050
SRR2545915Juvenile tuber28.540
SRP108465SRR5643513five period of Gastrodia elata16.800
SRR5643514five period of Gastrodia elata13.230
SRR5643515five period of Gastrodia elata13.500
SRR5643524five period of Gastrodia elata13.220
SRR5643525five period of Gastrodia elata12.140
SRR5643528five period of Gastrodia elata9.070
SRR5643658five period of Gastrodia elata9.820
SRR5643659five period of Gastrodia elata24.100
SRR5643660five period of Gastrodia elata26.230
SRR5643661five period of Gastrodia elata24.160
SRR5643662five period of Gastrodia elata24.400
SRR5643663five period of Gastrodia elata22.000
SRR5643664five period of Gastrodia elata28.030
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.170
SRR6049655Rhizomagastrodiae_C368-T10_good_120.710
SRR6049656Rhizomagastrodiae_C368-T07_good_122.520
SRR6049657Rhizomagastrodiae_C368-T07_good_129.200
SRR6049658Rhizomagastrodiae_C368-T04_good_132.150
SRR6049659Rhizomagastrodiae_C368-T04_good_135.090
SRR6049660Rhizomagastrodiae_C368-T01_good_130.210
SRR6049661Rhizomagastrodiae_C368-T04_good_128.940
SRR6049662Rhizomagastrodiae_C368-T01_good_122.930
SRR6049663Rhizomagastrodiae_C368-T01_good_127.860
SRR6049664Rhizomagastrodiae_C368-T10_good_117.470
SRR6049665Rhizomagastrodiae_C368-T10_good_117.470
SRP279888GastroGastrodia elata tuber 26.56
JuvenJuvenile tuber24.68
Mother_GastroMother tuber of Gastrodia elata 10.10
Mother_JuvenMother tuber of Juvenile 16.14