Detail information of GWHGAAEX008287/evm.TU.scaffold_213.21_evm.TU.scaffold_213.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262197429|ref|YP_003268638.1| | 4.00E-73 | methylthioribulose-1-phosphate dehydratase [Haliangium ochraceum DSM 14365] |
| KOG | KOG2631 | 4.00E-126 | Class II aldolase/adducin N-terminal domain protein |
| nr | gi|586781294|ref|XP_006859015.1| | 0 | hypothetical protein AMTR_s00068p00163030 [Amborella trichopoda] |
| Swissprot | tr|B9N1F9|MTBC_POPTR | 0 | Enolase-phosphatase E1 {ECO:0000255|HAMAP-Rule:MF_03118} |
| trEMBL | tr|U5DG81|U5DG81_AMBTC | 0 | Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 {ECO:0000256|HAMAP-Rule:MF_03118} |
| TAIR | AT5G53850_1 | 4.00E-126 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000216 | 506459 | 565520 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008287
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00596.20 | Aldolase_II | 30 | 230 | 1.70E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K16054 | DEP1 | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019509 | Biological Process | L-methionine biosynthetic process from methylthioadenosine |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0043874 | Molecular Function | acireductone synthase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.370 |
| SRR2545915 | Juvenile tuber | 25.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.830 |
| SRR5643514 | five period of Gastrodia elata | 21.900 | |
| SRR5643515 | five period of Gastrodia elata | 18.850 | |
| SRR5643524 | five period of Gastrodia elata | 23.560 | |
| SRR5643525 | five period of Gastrodia elata | 9.700 | |
| SRR5643528 | five period of Gastrodia elata | 7.950 | |
| SRR5643658 | five period of Gastrodia elata | 7.360 | |
| SRR5643659 | five period of Gastrodia elata | 18.590 | |
| SRR5643660 | five period of Gastrodia elata | 16.750 | |
| SRR5643661 | five period of Gastrodia elata | 19.270 | |
| SRR5643662 | five period of Gastrodia elata | 19.240 | |
| SRR5643663 | five period of Gastrodia elata | 20.560 | |
| SRR5643664 | five period of Gastrodia elata | 16.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.08 |
| Juven | Juvenile tuber | 17.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.21 | |
| Mother_Juven | Mother tuber of Juvenile | 15.75 |