Gene detail

Detail information of GWHGAAEX008290/evm.TU.scaffold_213.27

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|146298365\|ref\|YP_001192956.1\|	2.00E-25	two component regulator [Flavobacterium johnsoniae UW101]
nr	gi\|672191718\|ref\|XP_008775577.1\|	3.88E-176	PREDICTED: LOW QUALITY PROTEIN: pollen-specific leucine-rich repeat extensin-like protein 3 [Phoenix dactylifera]
Swissprot	tr\|O81765\|PLRX4_ARATH	8.00E-177	Pollen-specific leucine-rich repeat extensin-like protein 4 (Precursor)
trEMBL	tr\|F6HQF6\|F6HQF6_VITVI	2.00E-168	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56913.1}
TAIR	AT4G33970	3.00E-176	Leucine-rich repeat (LRR) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000216	680032	682166	+

Transcript Sequence
>GWHTAAEX008290 ATGAGGGTCTTGGGGCACCTTCTCCTCCTCCTCCTTTGCCTGCTGTTCCCCCTCTTCGCCTCGCCCCTCTCCAACCTCGAATCCGCCTTCATTGCCCATCGGCAGCTCCAAAGCCTCCCCGAAAACGGTGACCTCCCCTCAGACTTTGAGTTCAGCGTCGAAATCGATGTCCGCATCAAGAACCCTCGCCTCCGCCGCGCCTACATCGCCCTCCGCGCCTGGAAGCGCGCCATCTATTCCGACCCCTTCAACACCACCGGCGATTGGGCCGGCCCAGACGTCTGCGCCTACTCCGGCGTCTTCTGCGCTCCCGCCCTCGACGACCATTCCCTGAACGTAGTCGCCGGCGTCGATCTCAACGGCGCGGACATCGCCGGCTACCTCCCCGTCGAGCTCGGCCTCCTCTCCGACGTCGCCCTAATCCACATTAACTCCAACCGATTCTGCGGCATAATTCCCAACAGCTTCTCCCGCCTCTCCCTCCTCCACGAACTGGACGCCAGCAACAACCGCTTCGTTGGTCCTTTCCCCTCCTCCGTCCTCGCCCTCCCATCCATCAGATACCTAGATCTGCGATACAACGACTTCGAGGGCTCCCTTCCCGCCCAGCTCTTCGAAAAGGACATCGACGCATTGTTCCTCAACGACAACCGCTTCGATTCCCGCATTCCTGAGAATCTCGGGAGATCCCCTGCTTCCGCCCTCGTCCTGGCCAATAATCGCCTCAACGGATGCATTCCTACCAGCATCGGCGATATGGGGGGAAGCCTTAACGAAATCATTTTGCTGGGAAACGATCTCTCTGGCTGCCTACCTTCGGTGATCGGGAAGCTCGCGGATGTCACCGTGTTCGATGCCAGCAGAAATTTCTTTACCGGCGCCGTGCCGAAGAGCCTAGCTGGTCTCCGAAGCGTTCAGGAACTCAATCTGGCTCGCAATCATCTCACCGGCATCGTTCCTGGAGAGATTTGCGAGCTGCCCAGGCTCAAAAACTTGAGCTTCTCGTTTAATTATTTCAAGGGAAGTGACGAACAGTGTTCGTCTGAGACGAGGTCCGGGGTGCTGTTTGACGGCAAAGGGAACTGCATTGCGAACCGGCCGAAGCAAAGGACGGCTCAGGAGTGTGCTCCGGTGGTTAAAAAGCCGGTCGACTGCAGCCGGTCTAAGTGCGCCGGTCGGTCCACAAAGGCTTCTCCGGCTAAAGTAATGCCTGGTCCACGAAAGCCTTCGAAGGATGTGTCGCCGGTTGAGAGAATGCGCTCGCCACCTCCTCCATCGGCTTCTTCTCCAGCTCCACAGATTAGTCCCTTGCCTGCTACAAAGCAGAGCCCTTCTTTTGAACCGGTTCCATCTCCACCGGTTCAACTGACTCCGGTCAGCTCGCCGTCGCCGTCGACATCACCGTCGCCAACACCGTCACAGTCGCCGTCACCGTCACAGTCGCCGTCGCCATCGCCTGCGCCTCTTCCTCCCCCTGTAGTGCCCCCGCCTCCCCCAGTTCTCCACTTACCACCCCCACCACCTTTGTACTCACCGCCCCCGCCTCCGCGAGTAGTCCATTCACCACCACCACCGGTGTACTTACCGCCCCCGCCTCCGCGAGTAGTCCATTCACCACCACCAACGGTGTACTTACCGCCCCCGCCTCCGCGAGTAGTCCATTCACCACCACCACCACCGGTGTACTTACCGCCGCCTCCGCCACCAGTTGTCCATCCACCCCCACCACCACCACCACCGGTGTACTCACCTCCGCCACCTCCGGTGCACTACCCACCACCGCCGATGCACTCCCCGCCGCCACCGCCTCCTGTTGTACACTACCCACCACCGCCGGTGCACTCCCCGCCGCCACCGCCTCCTGTTGTACACTACCCTCCTCCGCCGCCGGTTCGCTCACCTCCTCCGCCGCCAGAATTTTCGGATATCACACTTCCACTGATCGGTGGATATAACTACGCTTCTCCACCACCTCCAGTTTATCCGGGATACTGAGAACTCACGTGTTTTTGGGTTGTCGCCAAAAGTTGTATTATAAGAATTTTTTTATATACATTTTATTTAAGGCCATCTCTTTATTGGTGTTTTGGAAAGTACTGCTAAATTTTATTAATTAAATTTTATATAAATAATTT

Network for GWHGAAEX008290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.5	LRR_8	287	338	1.40E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.160
SRP108465	SRR5643513	five period of Gastrodia elata	0.440
	SRR5643514	five period of Gastrodia elata	0.680
	SRR5643515	five period of Gastrodia elata	0.410
	SRR5643524	five period of Gastrodia elata	0.640
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.070
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.060
	SRR5643660	five period of Gastrodia elata	0.070
	SRR5643661	five period of Gastrodia elata	0.230
	SRR5643662	five period of Gastrodia elata	0.070
	SRR5643663	five period of Gastrodia elata	0.050
	SRR5643664	five period of Gastrodia elata	0.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.940
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.420
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.13
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	0.05