Detail information of GWHGAAEX008298/evm.TU.scaffold_213.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297526386|ref|YP_003668410.1| | 3.00E-08 | DNA primase, large subunit [Staphylothermus hellenicus DSM 12710] |
| KOG | KOG2267 | 0 | Eukaryotic-type DNA primase, large subunit |
| nr | gi|743774403|ref|XP_010917553.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: probable DNA primase large subunit [Elaeis guineensis] |
| Swissprot | tr|Q84WJ2|PRI2_ARATH | 0 | Probable DNA primase large subunit |
| trEMBL | tr|D7TS99|D7TS99_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI33371.3} |
| TAIR | AT1G67320_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000216 | 1088981 | 1134852 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008298
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04104.13 | DNA_primase_lrg | 167 | 432 | 1.60E-87 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02685 | PRI2 | DNA replication | map03030 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006269 | Biological Process | DNA replication, synthesis of RNA primer |
| GO:0016779 | Molecular Function | nucleotidyltransferase activity |
| GO:0003896 | Molecular Function | DNA primase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.940 |
| SRR2545915 | Juvenile tuber | 11.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.830 |
| SRR5643514 | five period of Gastrodia elata | 12.740 | |
| SRR5643515 | five period of Gastrodia elata | 10.840 | |
| SRR5643524 | five period of Gastrodia elata | 12.470 | |
| SRR5643525 | five period of Gastrodia elata | 11.470 | |
| SRR5643528 | five period of Gastrodia elata | 14.820 | |
| SRR5643658 | five period of Gastrodia elata | 16.440 | |
| SRR5643659 | five period of Gastrodia elata | 9.010 | |
| SRR5643660 | five period of Gastrodia elata | 9.370 | |
| SRR5643661 | five period of Gastrodia elata | 7.280 | |
| SRR5643662 | five period of Gastrodia elata | 7.970 | |
| SRR5643663 | five period of Gastrodia elata | 9.240 | |
| SRR5643664 | five period of Gastrodia elata | 6.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.95 |
| Juven | Juvenile tuber | 10.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.93 | |
| Mother_Juven | Mother tuber of Juvenile | 13.02 |