Gene detail

Detail information of GWHGAAEX008304/evm.TU.scaffold_214.7

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2115	Vacuolar sorting protein VPS45
nr	gi\|743825649\|ref\|XP_010933078.1\|	PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic [Elaeis guineensis]
Swissprot	tr\|F4JT76\|VPS54_ARATH	Vacuolar protein sorting-associated protein 54, chloroplastic (Precursor)
trEMBL	tr\|M0SRY5\|M0SRY5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P25240_001}
TAIR	AT4G19490	VPS54

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000217	160498	267528	-

Transcript Sequence
>GWHTAAEX008304 TATTGCTCGAATTCTTGATGGGTTGATCAGTTCATTTGCCTGGAAAGCAGCAGTGATGCCTGAAATAGCAGACGCCACTGCTGCGACCATTCGACTTTACGTCGCAACATTTTCGTCTCCTCCTTTATTGGCTTTCAGATCTTAGAAATCGATTCCTTGCTCACATTTCTCCGGCGACCCAAGCTTACGATCGGGCAGCTGATCTAACAACTCCATTGAGATCGATGATTTCAGCATCCTGAGTAGCAGCTGTAGGAGATGGAAGGGCCGCCTTCTCACTCAGGAAGGGCTGCCATCCGCACAGCAAGCTCATCCTCCTCCAGATCCGGCGCCGACCTGAATCATCCTTCCTCGTTTGTCTTCTCCTCCACTTCTGTTACACAGAGCCTTTCCTCCATCCTCAATAACCCTCACGCCTCCCGCACCGACGCTTCTTGGTCCATCTTTTGGCCGTCTGCGTCCGCTGGCTTGCCCGATTTTTCGGTCCCGATCGCCTCCTCCGTATCCCTCCCAGAGGTATCCCGTTCCGAATTCCAGCAGTATCTTTCAGAAATATCGGAATCGTTTTCCCGCTTCGAGGATGTTCGCAATCACACCAGCCGAGAGACCGGCGATGCAATCGCCGAGTCGCGCCGTCAAGGGGGCGCTCTCGTTGCCTGCCTTCGGGAAGTGCCAGCACTCTTCTTTAAAGAGGACTTCTCGCTTGAGGAGGGTGCAATTTTCCGTTCTGCTTGTCCCTTTTCTCCATCGGCGGAGGAGAACGTCAAGCTACAGGAGAGGCTTACCCATTATTTGGATGTGGTGGAGATGCACTTGGTAAGGGAGATTTCACTGCGCTCTGACTCGTTCTTTGAAGCCCAGGGGCAACTGCAAGGATTGAATGGGGAGATTGTGGAGGCATGCGTAAAGGTTAGGGAATTGAAGGAGACGATTAGGATATTGACTGGTGATCTTGTGGGCTCAGCCAAGCAGGTACAGGAGCTCAATGCCACTAGGGGCAACCTCGTGGCATTGCATCAGATGCTCACTGTGATATTGTATGTTAGCCAAGCTCTTTCAGCTTTGAAGCTGCTTGTGGGTGCTGCCGACTGTGCTGGTGCATTAGATGTCATTGACGACTTGCATCATTTATTGGAAACTGATGAACTTACTGGGCTTCATTGCTTTCGGCATCTAAGGGATCAATTGGCAGGATCCTTGGATTCTGTAAACAGCATTCTTTCAGCAGATTTTGTTCGATCAGCAATTCATGACGTTAAAGCTGTAGATTCATTGATATTGTCAAAAATAAAGGCAAACTCTCCTGGTATCATTAATGGTTTAGAAAATGAGCTTAAAAGTCATGATGATAAAGGCTTGGTTCTCCGTGATCGTCTTCTTCCTCTAATTTATGGGCTACTCAGAACAGCTAAACTTCCCACGGTTTTGAGGATCTACCGAGACACTCTTATTACTGAAATGAAGGCTGCAATCAAAAGTACGGTTGCACAACTTCTCCCTATTTTGCTATCTCGGCCATCAGATTCTGATATATTATCTGGAGAACGAGCTATGGACTCAGATGGTGGAGGCTTATCTCTTGCTAGCAAGCTTAGGAGTCTTTCATCTGAAAGCTTTGTCCAACTTTTAATTGCTATTTTCAAGATTGTTCAGGCACATTTAATGCAAGCTGCAGAAGTAAAAAATGCTATTGAGTTTATGATGGGTAATCATGAAAGTTATGCTTGTGATTCTGCAACAACATTAGTCAACCATGACTCATCGGCTATTGATGTTGCCATTGAAAATGAAAGTCAGCCTTATTTATATTTTTTGCGTTCTTTCCCCAAGAATGTCCAAAAGAATTTTTTTATTCAAGCAAAAACAAATGGTACATCCAGCCCTATGACTTCCAAGAACTTTCGTGCTGATGTATTGCGAGAAAACACAGAAGCTGTATGTGCTGCTTGTGATGCTGCTCATGGAAGATGGGCTAAACTTCTTGGCGTCCGTGCTCTTCTTCACCCGAAGTTAAGACTTCATGACTTTTTGAGCATCTATAACATAACACAGGACTTCATCACAGCTACTGAAAAGATTGGTGGGAGACTAGGCTACAGCATTCGAGGGACATTGCAGTCACAATCAAAATCATTTTTTGATTTTCAACATGAATCTCGTATGACAAAGATTAAAGCTATTTTAGATCAAGAAACATGGGTGACTGTTGACGTTCCTGAGGAATTTCAGGCAATTATTGAATCTCTTCATTTTCACGACTCGTTAGTTAATGATCAGTCCTTGCAGAACAATCATAACGAGCAGCAGACTAGTCTTAATTCCTCTATTGCTCAAGATCATTTAGATAGCAGTGGGATAAATGAAAGCACTGCATGTGAATCTAATCAAAACCTTCCTATTCCGTCTGTTATCGTTAATAGAGAAAACAAATTGGATTCTGCAGCAAAACTAAATGTTGAAGGTAACACCGGTGAAACTGGAAGATCTGCTTCTCGGACGCTTGTGTATGGCGGTGTTGGTTATCATATGGTGAATTGTGGTTTAATACTATTGAAGATGCTGTCTGAGTATGTTGATATTAGTAAATGCTTGCCAGCTTTATCATCTGAAGTCATTCACCGTGTAGTGGAAATTCTGAAAATATTCAATACCAGAACTTGCCAACTTGTTCTTGGTGCTGGTGCTATGCAGGTATCTGGTTTAAAGTCTATAACTTCAAAGCACTTAGCTTTAGCAAGCCAAATTATCAGTTTTATTTATGCTATCATGCCAGATATCAGAAGTGTTCTTTTTATAAAAGTGCCTGAGAGTCGCAAAGGGTTGTTGCATTTAGAGATTGAAAGAGTAGCCCAGGACTACAAAGTTCATCGTGATGAGATTCATTCAAAATTAGTTCAAATAATGCGGGAAAGATTATTAATAAATTTGCGAAAGTTGCCGCAAATCGTCGAGAACTGGAATGCTCCAGAGGATAATGATCCACAGCCCAGCCAATTTGCCAAAGCAATAACCAAGGAAGTTACTTATCTTCATCGCATCCTTTCTCAAACATTACTTGAGAATGATGTCCAAGCAATTTTCAGGCAAGTTGTTCAAATTTTCCATTCTCATTTGTTTGAAGAATTTTCAAAATTGGATATCAGCACACCTCAAGCCAAGAATCGACTTTACCTTGATGTTCAGATTATACTTGAATGCATACACAAGCTGCCTTCCGATGTTTCAAACAAAAATCAAGCACCAAACTATGGTCTGCTAGATGAATTTAGGGCAAAGAGATTTGGAGAAAAAGACACGCTGATCATATAAATTAGGTGCTGACTTCATTCTAGACATTTTTGGTGGGGACTGATTGTAAAATGCTGGAGCTACGACTATGGTTTCAATACCATTCAGGTAAAGAGAAATAAAGCAAATGAGGATTCCTGCTGCTATTTCGGTTTTTGCAATTTGTTAGTTTACACGCTTTTTGTGCAATTTTGTAATTAAATATTTTGAAATGCTCCCATTTGTACATGTTGTAATTTGTAATTTGGGAGCTTTGCTTTCATAACAACTCGGATTGTATGTATATTCAGTACTTTGTGCAGCTATGTTTTATAATATGGCTCTGCGATTATGATGAAAATGTCAACTTCAATTTTTGC

Network for GWHGAAEX008304

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07928.11	Vps54	755	885	1.70E-44

Protein Sequence

>GWHPAAEX008304
MEGPPSHSGRAAIRTASSSSSRSGADLNHPSSFVFSSTSVTQSLSSILNNPHASRTDASWSIFWPSASAGLPDFSVPIASSVSLPEVSRSEFQQYLSEISESFSRFEDVRNHTSRETGDAIAESRRQGGALVACLREVPALFFKEDFSLEEGAIFRSACPFSPSAEENVKLQERLTHYLDVVEMHLVREISLRSDSFFEAQGQLQGLNGEIVEACVKVRELKETIRILTGDLVGSAKQVQELNATRGNLVALHQMLTVILYVSQALSALKLLVGAADCAGALDVIDDLHHLLETDELTGLHCFRHLRDQLAGSLDSVNSILSADFVRSAIHDVKAVDSLILSKIKANSPGIINGLENELKSHDDKGLVLRDRLLPLIYGLLRTAKLPTVLRIYRDTLITEMKAAIKSTVAQLLPILLSRPSDSDILSGERAMDSDGGGLSLASKLRSLSSESFVQLLIAIFKIVQAHLMQAAEVKNAIEFMMGNHESYACDSATTLVNHDSSAIDVAIENESQPYLYFLRSFPKNVQKNFFIQAKTNGTSSPMTSKNFRADVLRENTEAVCAACDAAHGRWAKLLGVRALLHPKLRLHDFLSIYNITQDFITATEKIGGRLGYSIRGTLQSQSKSFFDFQHESRMTKIKAILDQETWVTVDVPEEFQAIIESLHFHDSLVNDQSLQNNHNEQQTSLNSSIAQDHLDSSGINESTACESNQNLPIPSVIVNRENKLDSAAKLNVEGNTGETGRSASRTLVYGGVGYHMVNCGLILLKMLSEYVDISKCLPALSSEVIHRVVEILKIFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQIISFIYAIMPDIRSVLFIKVPESRKGLLHLEIERVAQDYKVHRDEIHSKLVQIMRERLLINLRKLPQIVENWNAPEDNDPQPSQFAKAITKEVTYLHRILSQTLLENDVQAIFRQVVQIFHSHLFEEFSKLDISTPQAKNRLYLDVQIILECIHKLPSDVSNKNQAPNYGLLDEFRAKRFGEKDTLII

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0042147	Biological Process	retrograde transport, endosome to Golgi

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.820
SRP064423	SRR2545915	Juvenile tuber	20.800
SRP108465	SRR5643513	five period of Gastrodia elata	20.530
	SRR5643514	five period of Gastrodia elata	21.000
	SRR5643515	five period of Gastrodia elata	21.360
	SRR5643524	five period of Gastrodia elata	21.310
	SRR5643525	five period of Gastrodia elata	24.110
	SRR5643528	five period of Gastrodia elata	21.480
	SRR5643658	five period of Gastrodia elata	28.750
	SRR5643659	five period of Gastrodia elata	35.010
	SRR5643660	five period of Gastrodia elata	38.950
	SRR5643661	five period of Gastrodia elata	28.140
	SRR5643662	five period of Gastrodia elata	20.840
	SRR5643663	five period of Gastrodia elata	26.900
	SRR5643664	five period of Gastrodia elata	27.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.950
SRP279888	Gastro	Gastrodia elata tuber	38.81
	Juven	Juvenile tuber	40.82
	Mother_Gastro	Mother tuber of Gastrodia elata	34.92
	Mother_Juven	Mother tuber of Juvenile	46.42