Detail information of GWHGAAEX008307/evm.TU.scaffold_214.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1488 | 0 | Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) |
| nr | gi|743835108|ref|XP_010935723.1| | 0 | PREDICTED: pumilio homolog 1-like [Elaeis guineensis] |
| Swissprot | tr|Q9SS47|PUM4_ARATH | 0 | Pumilio homolog 4 |
| trEMBL | tr|M0SN76|M0SN76_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P12110_001} |
| TAIR | AT3G10360 | 0 | pumilio 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000217 | 392412 | 407423 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008307
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07990.11 | NABP | 300 | 365 | 1.70E-07 |
| PF07990.11 | NABP | 384 | 649 | 2.10E-60 |
| PF00806.18 | PUF | 651 | 684 | 2.10E-05 |
| PF00806.18 | PUF | 686 | 719 | 1.90E-08 |
| PF00806.18 | PUF | 724 | 755 | 4.00E-05 |
| PF00806.18 | PUF | 759 | 792 | 1.20E-06 |
| PF00806.18 | PUF | 796 | 828 | 2.40E-08 |
| PF00806.18 | PUF | 832 | 865 | 9.20E-08 |
| PF00806.18 | PUF | 868 | 899 | 6.60E-06 |
| PF00806.18 | PUF | 917 | 943 | 1.40E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 72.160 |
| SRR2545915 | Juvenile tuber | 67.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 57.480 |
| SRR5643514 | five period of Gastrodia elata | 56.050 | |
| SRR5643515 | five period of Gastrodia elata | 47.540 | |
| SRR5643524 | five period of Gastrodia elata | 53.710 | |
| SRR5643525 | five period of Gastrodia elata | 42.980 | |
| SRR5643528 | five period of Gastrodia elata | 36.570 | |
| SRR5643658 | five period of Gastrodia elata | 41.790 | |
| SRR5643659 | five period of Gastrodia elata | 60.110 | |
| SRR5643660 | five period of Gastrodia elata | 64.580 | |
| SRR5643661 | five period of Gastrodia elata | 58.560 | |
| SRR5643662 | five period of Gastrodia elata | 67.190 | |
| SRR5643663 | five period of Gastrodia elata | 63.360 | |
| SRR5643664 | five period of Gastrodia elata | 76.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 57.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 50.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 55.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 64.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 61.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 70.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 62.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 62.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 47.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 53.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 53.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 62.43 |
| Juven | Juvenile tuber | 113.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 43.75 | |
| Mother_Juven | Mother tuber of Juvenile | 77.87 |