Gene detail

Detail information of GWHGAAEX008312/evm.TU.scaffold_214.17

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|150008082\|ref\|YP_001302825.1\|	9.00E-38	multidrug ABC transporter ATPase [Parabacteroides distasonis ATCC 8503]
KOG	KOG0061	0	Transporter, ABC superfamily (Breast cancer resistance protein)
nr	gi\|743835599\|ref\|XP_010935863.1\|	0	PREDICTED: ABC transporter G family member 28-like [Elaeis guineensis]
Swissprot	tr\|Q9FF46\|AB28G_ARATH	0	ABC transporter G family member 28
trEMBL	tr\|M5XJ14\|M5XJ14_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ21493.1}
TAIR	AT5G60740	0	ABC transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000217	509615	562710	+

Transcript Sequence
>GWHTAAEX008312 CTCCCCCTTTTATTCTCGTGCAGATTGCTGGTACCTTTCACTCGCAAACTAAGTCGTCTTCCTCCCTCAGGGTATTTTTTCTTCTTTCATAGACGTCCGGAATGCTTCCCTGTTCTTATTTCTGAGCTCGCCGGAAAGTCGACCGAGATGCCGGCGGCCCTCCATCTCGCCGTCTCGATCCTTTTCTACAGCATCTCAGCCATATGGTGTCTTAACGAAAGCGCCATCTCTGGAATCATCAATGCCCCTCCGCCGGCTCTGCCTTACTTGACGGAAGGTTTTTATGACAGATTCTCAAACTACAGCTACAAACTCGTGGATGTGGTCAGCCAGCACCTCGGCTTCTGCATCAACGATCCGAAAAAGGACTGGAACGAAACGTTCAACTTCTCGTCGGATTTTGGGTTTCTGTCCGATTGCCTCGCAGAAACAAACGGGGATATGCCGCAAAGATTATGCACAGCTGCTGAAATGAAATTATACTTCAGCAGCGTCTTTGTTGGACAAAATGAATTCTTGAGGCCGAACAGAAACTGCAATTCCAGTGCTTGGGTTTCAGGATGTGAGCCTGGATGGGCATGCAGCACTGTGGAAACTCAAGATGCTCACTTCAATGATTCCATGAACATTCCCTCAAGAACCCAGAATTGCCGCCCTTGTTGCCCGGGTTTCTTCTGCCCTCGTGGTATAACGTGCATGATACCATGCCCCTTGGGTGCATACTGCCCACGTGCCCAACTGAATACATCTACTGGTGTTTGTGAACCGTACAGCTACCAGCCTCCTGCTGGGCAGACAGATCATACTTGTGGTGGTGCTGATAGATGGGTGAATGTTCAAATTAGCAGTGAAATGTTCTGCCCTGCTGGGTTTTTTTGCCCAAGCACAGTTAGAAGAGAAGCTTGTAGTAGTGGCCATTATTGCAGGTTGGGATCCACATCAGAGAGAAAGTGCTACAGGAAGAGCTCGTGCAAGCCAAATTCTTCCAATCAAAATATTACTTTATTTGGTGTTTTGTTAATGGTTGCATTGAGTTTGGTCTTATTGATTATATACAACTTTTCTGGCGAAATTCTAACCAGACGAGAGAGGAGACTGGCCAGATCCAGAGAAGCTGCTGCAAGAAGTGCTAGAGAAAAAGTGCAAGCTCACGAGAAATGGAAATTAGCTAAAGATCTTGCAAAGAGGCGTGTTCGTGGACTATCACAAACATTTTCTCGCAAGCTGTCTCTTCAAATTTCTGATGACCGTTATACTCTGGATGCATATCTAAACCAATCAGAACTAATAACATCAAAAGATAATGAGAAAGGTAATGTTAAGATCGTGGATTCAATTGAGGATGACCGTGAAAATAGTGGTGCCTTCCAGGTGCAGATAGGATGTGCTAATTTTAAAAAGAAAGGACTGAAAGCAAAGAAAATGCATACTCATAGCCAGATCTTTAATTATGCATATGGTCAAATTGAAAAAGAAAAGGTCATGCAGCAAAAAACCGGCAATTTGAATTTTGCAGGGGTGGTTAAAATGGCCGCCAACATTAAAGCAAGAACAAGGCCTGAAATTGAAGTTACGTTCAGAAATCTAACTTTAACTTTGAAAGGAAGTAAATTGAAGCTCTTAAATTGTGTAACTGGGAAACTATTGCCTGGTCGTATAACTGCTGTTATGGGTCCGTCAGGGGCAGGAAAGACCACATTTTTAAGCGCTTTGGCTGGCAAAACAGCTGGATGTGATGTGACTGGTTCCGTTCTGATAAACGGTAAAGCAGGGTCTATCCGCCCATATAGGAAAATCATTGGTTTTGTGCCACAGGACGATATTGTGCATGGAAACTTGACCGTAGAGGAAAATCTATGGTTTAGTGCAAGCTGCAGGCTTTCAGTTGACATGCCATTGGCCGATAAAGTTTTGGTTGTGGAAAGAGTAATTGAATCTTTGGGACTCCAACATATTCGAGATTGCCTTGTTGGGACTGTGGAAAAGCGTGGAATCTCTGGAGGCCAGAGAAAAAGAGTGAATGTTGGGCTTGAAATGGTTATGGAACCTTCATTACTGATATTGGATGAACCCACATCTGGTTTGGATAGCTCTTCATCTCAGTTACTTTTAAGAGCTCTCCGTCGTGAGGCACTTGAAGGAGTAACCATTTGTATGGTGGTTCACCAGCCAAGTTATGCTTTATTCAAAATGTTCGATGATCTGGTATTACTAGCAAAAGGTGGTATGGTTGTGTATCTTGGGGATCTTAAGAATGTTGAGGACTACTTCTCTGGCCTTGGGATTAATGTTCCTGAGCGTATTAATCCTCCGGATTATTACATTGATATTTTAGAAGGAATTTTAAAGCCACCTGGAATCAATGCTAAACAACTTCCTCTTTGGTGGATGCTTGCTAATGGGTATGATGTACCTCCTAACATGCAGCAGATCCTCGGTGCTGATAACTTGCTGGAAAAGGACTGCGATGCAAATAGCTCATGTGAAAATAGTGAGCAGTCAGTTGTTGGTGAAGTTTGGGATGACGTGAAGGATGATTTTCAGTTTAGAGCAGAACATTTAGTTTGTAATATATCAAAAGAAAAAGATTTGACCTATCGTAGAACTCCTGGTATTCTCAAGCAGTACAGATACTTCTTGGGAAGGGTTGTGAAGCAGCGCTTGCGTGAAGCTAGAATACTTGGAATTGATTTCTTAATTCTAGGTTTGGCTGGAGTTTGCTTGGGGACATTTGCTAAACTGAAGGACGATTCATTTGGGTTTTCTGGTTATACATACACCATCATCGCTGTTTCTCTCCTTTGCAAGATTGCAGCTTTGCGGTCATTTTCGCAGGACAAATTGCATTATTGGAGAGAGAGATCTTCTGGCATGCGCTCGTTGGCTTATTTTCTGTCGAAAGACACTGTTGACCATTTCAATACGCTCGTTAAGCCGATAGTTTACTTGTCAATGTTTTATTTCTTCAACAACCCGAGATCTTCGATATTGGACAACTATATTATTTTGGTTGCACTAGTCTACTGTGTCACTGGAATTGGATATGTTTTGGCCATTTGTTTGCAGCCAGGCTCTGCTCAGCTGTGTTCTACGCTTCTTCCAGTTGTCTTAACTCTGATAACAACCCAGCCTGGGAATTCAAATCTCTTGATTGATTTATGCTACAGCAAATGGGCTCTGGAAGGATTTATAATATCAAATGCAAAAAGGTATCCTGGAGTGTGGCTATTTACAAGGTGCGGCAGTCTACTGAAACTTGGTTATAACATTCGAGACTGGAATTTCTGTGTAATTATCCTCTTTGTATATGGTCTGGCTTCTCGTTTCATTGCCTTTTGTTGTATGATTTTTTTCATGAAAAAATAAAAGTTCTCAAATACGGATTAAATAAATTATTCTCTAATTTATAATCTGCATACAAGCAAAATAGTTTATGTTGAGTGCCAGAGGTAAATTACACAACTGCTAAATTTATAAATTTCAGCCATTCAATCACGTCAGTTGTGTAGGAACAATGTAGGACAGTCTTATCTGAAGCGCATATAATGAAAGTGATGCTATGCTGCTGTTTCTGTACAAGACACTGCAGAAGAAAGGCTGTCGTTTTATCAAGTCTGTTGTTTGTATTTGTCATTTTTTATTTTTTTAAATGAAGGATTGCCCAATGTTTATGTATATACATATTCAGTACCTCAATTTTTAATTTTGGGCAAAACAAACACTTGATATTGTACATATAGTTCCTGATATTGTATATTCTTAAAATGGGAAGGAATTTCGTTCTATATGCAACATC

Network for GWHGAAEX008312

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	493	644	2.20E-22

Protein Sequence

>GWHPAAEX008312
MPAALHLAVSILFYSISAIWCLNESAISGIINAPPPALPYLTEGFYDRFSNYSYKLVDVVSQHLGFCINDPKKDWNETFNFSSDFGFLSDCLAETNGDMPQRLCTAAEMKLYFSSVFVGQNEFLRPNRNCNSSAWVSGCEPGWACSTVETQDAHFNDSMNIPSRTQNCRPCCPGFFCPRGITCMIPCPLGAYCPRAQLNTSTGVCEPYSYQPPAGQTDHTCGGADRWVNVQISSEMFCPAGFFCPSTVRREACSSGHYCRLGSTSERKCYRKSSCKPNSSNQNITLFGVLLMVALSLVLLIIYNFSGEILTRRERRLARSREAAARSAREKVQAHEKWKLAKDLAKRRVRGLSQTFSRKLSLQISDDRYTLDAYLNQSELITSKDNEKGNVKIVDSIEDDRENSGAFQVQIGCANFKKKGLKAKKMHTHSQIFNYAYGQIEKEKVMQQKTGNLNFAGVVKMAANIKARTRPEIEVTFRNLTLTLKGSKLKLLNCVTGKLLPGRITAVMGPSGAGKTTFLSALAGKTAGCDVTGSVLINGKAGSIRPYRKIIGFVPQDDIVHGNLTVEENLWFSASCRLSVDMPLADKVLVVERVIESLGLQHIRDCLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVTICMVVHQPSYALFKMFDDLVLLAKGGMVVYLGDLKNVEDYFSGLGINVPERINPPDYYIDILEGILKPPGINAKQLPLWWMLANGYDVPPNMQQILGADNLLEKDCDANSSCENSEQSVVGEVWDDVKDDFQFRAEHLVCNISKEKDLTYRRTPGILKQYRYFLGRVVKQRLREARILGIDFLILGLAGVCLGTFAKLKDDSFGFSGYTYTIIAVSLLCKIAALRSFSQDKLHYWRERSSGMRSLAYFLSKDTVDHFNTLVKPIVYLSMFYFFNNPRSSILDNYIILVALVYCVTGIGYVLAICLQPGSAQLCSTLLPVVLTLITTQPGNSNLLIDLCYSKWALEGFIISNAKRYPGVWLFTRCGSLLKLGYNIRDWNFCVIILFVYGLASRFIAFCCMIFFMKK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.980
SRP064423	SRR2545915	Juvenile tuber	18.360
SRP108465	SRR5643513	five period of Gastrodia elata	24.040
	SRR5643514	five period of Gastrodia elata	23.630
	SRR5643515	five period of Gastrodia elata	20.280
	SRR5643524	five period of Gastrodia elata	28.510
	SRR5643525	five period of Gastrodia elata	21.070
	SRR5643528	five period of Gastrodia elata	20.860
	SRR5643658	five period of Gastrodia elata	29.440
	SRR5643659	five period of Gastrodia elata	9.140
	SRR5643660	five period of Gastrodia elata	8.650
	SRR5643661	five period of Gastrodia elata	10.430
	SRR5643662	five period of Gastrodia elata	9.310
	SRR5643663	five period of Gastrodia elata	8.540
	SRR5643664	five period of Gastrodia elata	8.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.600
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.370
SRP279888	Gastro	Gastrodia elata tuber	11.89
	Juven	Juvenile tuber	18.59
	Mother_Gastro	Mother tuber of Gastrodia elata	40.03
	Mother_Juven	Mother tuber of Juvenile	31.40